Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5146 ATGTTTGTCATGGGCAGATCCAAAATTTCGTACATGGTACCTGATTCCAACAACATAAACCAAGTTCTTGTACAGAATCCTCCTAGTACTACCACCCACCAATGTTCATTCCCAACTAAGCTTCTACTGTTACTGCGCCGCCTCATCCATTCAAAGGAAGCTGATGGGGGTTCACAAAGTAAGGAAGAAGAGAGAGTGTGCTCATGGTTATACACTTTGGCTCACTCTCAGAAATACATTGCCTTCGAGTATGTTGCTTCCACCGAAAGAGGTCTAAGTTTCACTGAAGCAGAGAGGAGGCTAAAGGAAAATGGGCCAAATGTTCCACTTGAGTATTCTTTTCCAAGGTGGTGGCATCTTTTGTGGAATTCTCTTTTCCATCCTTTTAACATGATCCTCATTGTTTTATCTGCAATGTCATTCATTGCTTGTGACGATGCAAATGGATGCATCATGCTTATACTGGTTTTCATTAGTGTTGCCCTTCGTTTCTGTCAGGAATACAGCAGCTCAAAAGCAGCCATGAAACTTTCTGAATTGGTAAGGTGCCCAGTAAAAGTGCAAAGATGCGCTGGTAGAGTTGTGCAGAGAGAGTTAATTGTTCAAGTTGATCACAGGGATATAGTTCCCGGCGACATTGTCATTTTTGAACCTGGTGATCTCTTTCCTGGTGATGTTAGGTTGTTATCTTCAAAGCATCTTGTTGTGAGCCAGGCCTCACTAACTGGGGAATCTTGGACAACTGAGAAAACTGCTGATATCAGAGAAGATCAAAGCACTCCTTTATTAGATTTAAAGAACATCTGCTTCATGGGCACAAGCGTGGTTTCAGGTACTGGAACAGGATTGGTTGTATCGACAGGATCCAATACTTATATGAGCACCATGTTTTCAAAAGTTGGGAAGAGGAAGCCACCAGATGACTTTGAAAAGGGTCTCAAGTGGATATTTTACTTGCTTATTTCAGTTATGCTAGTGCTAGTTACAATTATGTTCTTGACAGATTACCTTACATCTCTTAATTTGAGCAACAGCATTCTTTTTGCAATCTCAGTTGCATCTGCCCTCAATCCTCAGATGCTTCCCCTCATTGTGAATACATGTCTAGCCAAAGGAGCACTTGCTATGGCTAAAGACAAGTGTATAGTTAAAAGTTTGACCGCGATTCGCGAGATGGGATCCATGGATATTCTATGTATTGACAAGACAGGCACACTAACAATGAATCGTGCAATTATGGTTAATCATGTTGACAGCAAAGGGATGCCCCAAGAACAAGTTCTACGCTTTGCATTTCTCAATTCTTACTTCAAGATTGAGCAGAAGTATCCATTGGATGATGCAATTCTTGCATATGTATATACAAATGGACTTAAGTTTCAGCCATCCAAGTGGAGAAAGCTAGATGAGATTCCTTTTGACTTCATAAGAAGAAGAGTATCTGTAATCTTAGAAACAAATGAGAGACAGCCACAGTTCTCTGGCAGGTTCATGGTAACAAAAGGAGCATTGTTAGAAGTCATGAGAGTTTGTTCTTACATTGCGAATTCTGACAAAAAAGAAGGAATCTCGATCTTCTCTTCAGAAGACTATAAGAGAATCTTAAATCTTTCAGAAGAACTAAGCAATGAGGGATTAAGGGTTATAGCAGTAGCTATAAAGAAACTTGGAGAGGAAGCAAGTAATGGAATAAAGACAAGTGAGGAGGGAGACATGATATTCCTTGGACTAGTAACATTTTTCGACCCACCAAAGGCATCGGCGAAAGAAGCACTGCGGCGTTTGGCAGAAAAAGGAGTTGAAGCAAAGGTTTTAACAGGTGATTCACTGTCATTGGCAACAAGAGTATGCACTGAAGTTGGCATAAGAACCAGTGATGTGATAACAGGGCCAGAGCTAGAGCAACTTGACCAAGAAAGTTTCCATGGGACGGTTCAACGCGCCACGGTGCTAGCACGCCTGACGCCAACTCAGAAACTGAGAGTGGTACAGTCCTTGCAGACAGTTGGAAAGCATGTGGTTGGATTCTTGGGAGATGGTGTGAATGACTCTCTTGCCCTTGATGCTGCGAATGTTAGCATTTCAGTGGACTCAGGTGTAGCCATAGCCAAAGACATGGCAGATATCATCTTACTTGAGAAGGATCTGAATGTGCTGGTTGCAGGAGTAGAGCACGGTAGACTCACCTTTGGCAACACAATGAAGTATGTGAAAATGTCAGTTATTGCAAACCTGGGAGGCGTGATTTCACTACTCATAGCAATCTTGTTCCTCAAGTATGAGCCATTAACCTCTAAACAGCTCCTCACACAGAACTTGCTCTACAGCGTGGGACAAATCGCCATCCCCTGGGACAAAATGGACGGAGAGTATGTGAAGAGTCCTCAGAAATGGTCAGAGAAAGGGTTGCCAATGTTCATATTGTGGAATGGGCCAGTTTGCACTCTCTGTGACGTGGCAGCACTCTTGTTCCTTTGGTTCTATTACAATATCGGAGCTGATTTGGATGAGAAGTTCTTCCATTCAGCATGGTTCATTGAGGGCCTCCTCATGCAGACTCTCATCATTCACTTGATCAGAACTGACAAAATTCCTTTCATACAGGACATTGCTTCTTCGCCTGTCATGTGCTCCACGCTTGTCATATCTGCAATTGGAATTGCACTTCCATTCACACCTATTGGCAGAATCATGGAATTCACGCTTCTACCCTTCTCCTATTTCGGATTTTTGCTCATTCTTTTTCTTGGATACTTTGTACTTGGCCAGCTCGTTAAGAGACTTTACATATTGCTTTATAAGAGATGGCTTTGA 2814 0.4232 MFVMGRSKISYMVPDSNNINQVLVQNPPSTTTHQCSFPTKLLLLLRRLIHSKEADGGSQSKEEERVCSWLYTLAHSQKYIAFEYVASTERGLSFTEAERRLKENGPNVPLEYSFPRWWHLLWNSLFHPFNMILIVLSAMSFIACDDANGCIMLILVFISVALRFCQEYSSSKAAMKLSELVRCPVKVQRCAGRVVQRELIVQVDHRDIVPGDIVIFEPGDLFPGDVRLLSSKHLVVSQASLTGESWTTEKTADIREDQSTPLLDLKNICFMGTSVVSGTGTGLVVSTGSNTYMSTMFSKVGKRKPPDDFEKGLKWIFYLLISVMLVLVTIMFLTDYLTSLNLSNSILFAISVASALNPQMLPLIVNTCLAKGALAMAKDKCIVKSLTAIREMGSMDILCIDKTGTLTMNRAIMVNHVDSKGMPQEQVLRFAFLNSYFKIEQKYPLDDAILAYVYTNGLKFQPSKWRKLDEIPFDFIRRRVSVILETNERQPQFSGRFMVTKGALLEVMRVCSYIANSDKKEGISIFSSEDYKRILNLSEELSNEGLRVIAVAIKKLGEEASNGIKTSEEGDMIFLGLVTFFDPPKASAKEALRRLAEKGVEAKVLTGDSLSLATRVCTEVGIRTSDVITGPELEQLDQESFHGTVQRATVLARLTPTQKLRVVQSLQTVGKHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGGVISLLIAILFLKYEPLTSKQLLTQNLLYSVGQIAIPWDKMDGEYVKSPQKWSEKGLPMFILWNGPVCTLCDVAALLFLWFYYNIGADLDEKFFHSAWFIEGLLMQTLIIHLIRTDKIPFIQDIASSPVMCSTLVISAIGIALPFTPIGRIMEFTLLPFSYFGFLLILFLGYFVLGQLVKRLYILLYKRWL* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5146 937 SUPERFAMILY HAD-like 387 718 IPR036412 -
Amo13g5146 937 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 152 447 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo13g5146 937 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 647 757 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo13g5146 937 TIGRFAM ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 67 936 IPR006415 GO:0015444|GO:0015693|GO:0016021
Amo13g5146 937 SFLD p-type atpase 381 727 IPR044492 -
Amo13g5146 937 Pfam E1-E2 ATPase 193 378 - -
Amo13g5146 937 Gene3D - 411 581 IPR023299 GO:0000166
Amo13g5146 937 Pfam Cation transporter/ATPase, N-terminus 85 140 IPR004014 -
Amo13g5146 937 Gene3D - 183 287 - -
Amo13g5146 937 PANTHER CATION TRANSPORTING ATPASE 51 936 - -
Amo13g5146 937 Gene3D - 149 887 - -
Amo13g5146 937 SMART Cation_ATPase_N_a_2 74 145 IPR004014 -
Amo13g5146 937 Gene3D - 396 714 IPR023214 -
Amo13g5146 937 SFLD C1.7: P-type atpase like 381 727 - -
Amo13g5146 937 SUPERFAMILY Calcium ATPase, transduction domain A 193 298 IPR008250 -
Amo13g5146 937 ProSitePatterns E1-E2 ATPases phosphorylation site. 401 407 IPR018303 -
Amo13g5146 937 SUPERFAMILY Calcium ATPase, transmembrane domain M 87 934 IPR023298 -
Amo13g5146 937 PRINTS Magnesium-transporting ATPase signature 785 798 IPR006415 GO:0015444|GO:0015693|GO:0016021
Amo13g5146 937 PRINTS Magnesium-transporting ATPase signature 840 861 IPR006415 GO:0015444|GO:0015693|GO:0016021
Amo13g5146 937 PRINTS Magnesium-transporting ATPase signature 312 328 IPR006415 GO:0015444|GO:0015693|GO:0016021
Amo13g5146 937 PRINTS Magnesium-transporting ATPase signature 433 446 IPR006415 GO:0015444|GO:0015693|GO:0016021
Amo13g5146 937 PRINTS Magnesium-transporting ATPase signature 753 764 IPR006415 GO:0015444|GO:0015693|GO:0016021
Amo13g5146 937 PRINTS Magnesium-transporting ATPase signature 805 821 IPR006415 GO:0015444|GO:0015693|GO:0016021
Amo13g5146 937 PRINTS Magnesium-transporting ATPase signature 735 750 IPR006415 GO:0015444|GO:0015693|GO:0016021
Amo13g5146 937 PRINTS Magnesium-transporting ATPase signature 890 911 IPR006415 GO:0015444|GO:0015693|GO:0016021
Amo13g5146 937 Pfam haloacid dehalogenase-like hydrolase 395 691 - -
Amo13g5146 937 PANTHER MAGNESIUM-TRANSPORTING ATPASE, P-TYPE 1 51 936 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5146 Amo-Chr13 151239836 151243395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5146 82 936 Primary Pumps ATPases AT3G42640 25.795 6.36e-55 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5146 K01531 - gmx:100795153 1417.91