Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5137 ATGCTTGGTCAAGASGGTACCGCCGACCGCTCTGCCGCTCCCGCCGCTCCTCGTATGCCATATTCCCGCTCAGCTTCCTGGARTGATCGCTCTCCGGCTACCCCAAGGCCGCCGCCGTCGGGAAAYAAGCCGAGATCGCTGCTGCCGCCGCTTCAGCCTCTGGCCATCAGAAGGCGCGGCGCGGAGGAGTGGCCGAGCGCCGGATCTGACGATCTCGGCGTGTGGCCACTCCCGGAGACTCCAAGAGGGTCYGTGTCTGTGGTGGGGTCATCATCGGAGTTCCAGTTGAAGAGGGAGAAGCTGGCCTTCTACGACAAAGAGTGTTCTCGGATTGCGGAGCACGTGTACCTCGGGAGTGACACGGTGGCCAAGAACCATGASCTGCTSMGGCAGAACGGCATCACTCACGTGCTCAACTGTGTTGGCTTCGTTTGCCCTGAATATTTCAAGCGCGATTTTGTTTACAAGACTCTGTGGTTGCAGGACAGTCCCACAGAAGACATCACCAGCATCCTGTACGATGTTTTCGATTACTTTGAGGAGGTTAGGGAGCAAGGYGGGCGCGTGTTGGTTCACTGCTGCCAAGGGGTTTCGAGATCGACSTCTCTGGTGATCGCGTATCTGATGTGGAGGGAAGGGCAGAGCTTCGAGGAYGCGTTTCAGTACGTGAARAATGCGAGGGGTGTSACCAATCCTAACATGGGTTTTGCGTGTCAGTTATTGCAGTGTCAGAAACGGGTACATGCTACTCCCGCTAGTCCTAATTCCATTCTTCGGATGTATAGAATGGCTCCTCATTCACCTTATGATCCTCTTCATTTGGTTCCTAAGATTGTCAACCACCCCTCTGCACAGGCCCTTGATTCTCGTGGTGCTTTCATTGTGCATGTTCCTTCTGCTATTTATGTTTGGACAGGCAACAACTGCAATTCGGTTATGTCTTCTAATGCAAGAGGCGCSGCATCTCAGGTTGTTCGCTATGAGAGGGCTACGGCTCCTGTTCTTACCATCCATGAGTATGACGAGCCACCGGAGTTTTGGATTGCTCTTGCCTCTGCTGATTGTGACCAGCAGGAGAAGGAGGACACAASCTTGGAAGCTGTTCGTCCTAGGAAGCTTGATGAATATGATTTGGATTATGAGATTTTCCAAAAGGCACTTGCTGGYGGGGTTGTTCCACCTTTCTCTGTGTCTAATGCAGGCTCAGAGACCTGCCTTCCAGCCAGAGAAAGCGGTTGGGGGAGACTGCGCCGGAAACTCGCCAGCGGTTTCATCAAAGGATTGTTCACTTCATCCAAAAGGAACTCTACTAATGAAGAAGCTGCTCTTGTCATGGAAGATTTTGCTGTTAATGTTGATCCCAATGATTGCTCAGGCAGGGAAAAAGGTTATGTTGAAGTGTTGGATCATTTTGTTCCYATTACGGATGTGGATTCATCATTGCCAACATCATCAGATTATCTTCCTTGTTTCACGAGCAGCAGTTCCAAGTCACCAACGCTCTCGCCCTCCAGTTCTGATTATGCAAGTTCATTTACATTTTCACCTTCCTCAACAAATTTGTCTTCTCAGCAGCCATCACCTTCTACTTCTAGCATGGATTCAACCGAAACTATTTATGCCAAAGATGCTTCTGTATTGGACAGTTCCTCTCTGTTTCACAAGAAGGGTGATGTGTTTTTGGCTGATCAAACATCCGGAGGGTCCACCTTCTTTTTGCCATTGAAAGGGTCTATACCCTCCATTGCAGAGCGCAGAGGTAGTAATCCACCACCTCGCATGTTGCTACCTTCTTCAGTCACCGAGTCAYCCCATCCTCACAGGAGCAAGATTCATGTAAGATCAAAGTCATTTTCTTTGCCGGAATTGGATGATAACTTGTTAAAGGATGTTGATTGCAAGCAAGCTGATCCTGCTTCATGTAAATAA 1929 0.494 MLGQXGTADRSAAPAAPRMPYSRSASWXDRSPATPRPPPSGNKPRSLLPPLQPLAIRRRGAEEWPSAGSDDLGVWPLPETPRGSVSVVGSSSEFQLKREKLAFYDKECSRIAEHVYLGSDTVAKNHXLLRQNGITHVLNCVGFVCPEYFKRDFVYKTLWLQDSPTEDITSILYDVFDYFEEVREQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHATPASPNSILRMYRMAPHSPYDPLHLVPKIVNHPSAQALDSRGAFIVHVPSAIYVWTGNNCNSVMSSNARGAASQVVRYERATAPVLTIHEYDEPPEFWIALASADCDQQEKEDTXLEAVRPRKLDEYDLDYEIFQKALAGGVVPPFSVSNAGSETCLPARESGWGRLRRKLASGFIKGLFTSSKRNSTNEEAALVMEDFAVNVDPNDCSGREKGYVEVLDHFVPITDVDSSLPTSSDYLPCFTSSSSKSPTLSPSSSDYASSFTFSPSSTNLSSQQPSPSTSSMDSTETIYAKDASVLDSSSLFHKKGDVFLADQTSGGSTFFLPLKGSIPSIAERRGSNPPPRMLLPSSVTESXHPHRSKIHVRSKSFSLPELDDNLLKDVDCKQADPASCK* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5137 642 ProSitePatterns Tyrosine specific protein phosphatases active site. 191 201 IPR016130 GO:0016311|GO:0016791
Amo13g5137 642 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 100 248 IPR029021 -
Amo13g5137 642 MobiDBLite consensus disorder prediction 1 52 - -
Amo13g5137 642 SMART dsp_5 107 246 IPR020422 GO:0006470|GO:0008138
Amo13g5137 642 Pfam Dual specificity phosphatase, catalytic domain 115 245 IPR000340 GO:0008138|GO:0016311
Amo13g5137 642 ProSiteProfiles Dual specificity protein phosphatase domain profile. 107 249 IPR020422 GO:0006470|GO:0008138
Amo13g5137 642 Gene3D Protein tyrosine phosphatase superfamily 85 249 IPR029021 -
Amo13g5137 642 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 166 227 IPR000387 GO:0016311|GO:0016791
Amo13g5137 642 CDD DSP 108 242 - -
Amo13g5137 642 Gene3D Severin 259 356 IPR029006 -
Amo13g5137 642 MobiDBLite consensus disorder prediction 32 46 - -
Amo13g5137 642 MobiDBLite consensus disorder prediction 517 536 - -
Amo13g5137 642 PANTHER MKPA PROTEIN 28 601 - -
Amo13g5137 642 SUPERFAMILY Actin depolymerizing proteins 253 351 - -
Amo13g5137 642 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 28 601 - -
Amo13g5137 642 MobiDBLite consensus disorder prediction 582 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5137 Amo-Chr13 151105259 151108073 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5137 1 143 Protein tyrosine phosphatase (PTP) family AT3G55270 40.541 8.25e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5137 - - lja:Lj6g3v0574850.1 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5137 13 151105259 151108073 Amo13g5137 13 151105259 151108073 ECH
Amo13g5137 13 151105259 151108073 Amo20g1039 20 18412363 18416017 PCT