Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5124 ATGCTTGGTCAAGAGGGTACCGCCGACCGCTCTGCCGCTCCCGCCGCTCCTCGTATGCCATATTCCCGCTCAGCTTCCTGGAATGATCGCTCTCCGGCTACCCCAAGGCCGCCGCCGTCGGGAAATAAGCCGAGATCGCTGCTGCCGCCGCTTCAGCCTCTGGCCATCAGAAGGCGCGGCGCGGAGGAGTGGCCGAGCGCCGGATCTGACGATCTCGGCGTGTGGCCACTCCCGGAGACTCCAAGAGGGTCTGTGTCTGTGGTGGGGTCATCATCGGAGTTCCAGTTGAAGAGGGAGAAGCTGGCCTTCTACGACAAAGAGTGTTCTCGGATTGCGGAGCACGTGTACCTCGGGAGTGACACGGTGGCCAAGAACCATGACCTGCTCCGGCAGAACGGCATCACTCACGTGCTCAACTGTGTTGGCTTCGTTTGCCCTGAATATTTCAAGCGCGATTTTGTTTACAAGACTCTGTGGTTGCAGGACAGTCCCACAGAAGACATCACCAGCATCCTGTACGATGTTTTCGATTACTTTGAGGAGGTTAGGGAGCAAGGTGGGCGCGTGTTGGTTCACTGCTGCCAAGGGGTTTCGAGATCGACGTCTCTGGTGATCGCGTATCTGATGTGGAGGGAAGGGCAGAGCTTCGAGGACGCGTTTCAGTACGTGAAAAATGCGAGGGGTGTCACCAATCCTAACATGGGTTTTGCGTGTCAGTTATTGCAGTGTCAGAAACGGGTACATGCTACTCCCGCTAGTCCTAATTCCATTCTTCGGATGTATAGAATGGCTCCTCATTCACCTTATGATCCTCTTCATTTGGTTCCTAAGATTGTCAACCACCCCTCTGCACAGGCCCTTGATTCTCGTGGTGCTTTCATTGTGCATGTTCCTTCTGCTATTTATGTTTGGACAGGCAACAACTGCAATTCGGTTATGTCTTCTAATGCAAGAGGCGCGGCATCTCAGGTTGTTCGCTATGAGAGGGCTACGGCTCCTGTTCTTACCATCCATGAGTATGACGAGCCACCGGAGTTTTGGATTGCTCTTGCCTCTGCTGATTGTGACCAGCAGGAGAAGGAGGACACAACCTTGGAAGCTGTTCGTCCTAGGAAGCTTGATGAATATGATTTGGATTATGAGATTTTCCAAAAGGCACTTGCTGGCGGGGTTGTTCCACCTTTCTCTGTGTCTAATGCAGGCTCAGAGACCTGCCTTCCAGCCAGAGAAAGCGGTTGGGGGAGACTGCGCCGGAAACTCGCCAGCGGTTTCATCAAAGGATTGTTCACTTCATCCAAAAGGAACTCTACTAATGAAGAAGCTGCTCTTGTCATGGAAGATTTTGCTGTTAATGTTGATCCCAATGATTGCTCAGGCAGGGAAAAAGGTTATGTTGAAGTGTTGGATCATTTTGTTCCCATTACGGATGTGGATTCATCATTGCCAACATCATCAGATTATCTTCCTTGTTTCACGAGCAGCAGTTCCAAGTCACCAACGCTCTCGCCCTCCAGTTCTGATTATGCAAGTTCATTTACATTTTCACCTTCCTCAACAAATTTGTCTTCTCAGCAGCCATCACCTTCTACTTCTAGCATGGATTCAACCGAAACTATTTATGCCAAAGATGCTTCTGTATTGGACAGTTCCTCTCTGTTTCACAAGAAGGGTGATGTGTTTTTGGCTGATCAAACATCCGGAGGGTCCACCTTCTTTTTGCCATTGAAAGGGTCTATACCCTCCATTGCAGAGCGCAGAGGTAGTAATCCACCACCTCGCATGTTGCTACCTTCTTCAGTCACCGAGTCATCCCATCCTCACAGGAGCAAGATTCATGTAAGATCAAAGTCATTTTCTTTGCCGGAATTGGATGATAACTTGTTAAAGGATGTTGATTGCAAGCAAGCTGATCCTGCTTCATGTCCAGCTACCATATGA 1938 0.501 MLGQEGTADRSAAPAAPRMPYSRSASWNDRSPATPRPPPSGNKPRSLLPPLQPLAIRRRGAEEWPSAGSDDLGVWPLPETPRGSVSVVGSSSEFQLKREKLAFYDKECSRIAEHVYLGSDTVAKNHDLLRQNGITHVLNCVGFVCPEYFKRDFVYKTLWLQDSPTEDITSILYDVFDYFEEVREQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHATPASPNSILRMYRMAPHSPYDPLHLVPKIVNHPSAQALDSRGAFIVHVPSAIYVWTGNNCNSVMSSNARGAASQVVRYERATAPVLTIHEYDEPPEFWIALASADCDQQEKEDTTLEAVRPRKLDEYDLDYEIFQKALAGGVVPPFSVSNAGSETCLPARESGWGRLRRKLASGFIKGLFTSSKRNSTNEEAALVMEDFAVNVDPNDCSGREKGYVEVLDHFVPITDVDSSLPTSSDYLPCFTSSSSKSPTLSPSSSDYASSFTFSPSSTNLSSQQPSPSTSSMDSTETIYAKDASVLDSSSLFHKKGDVFLADQTSGGSTFFLPLKGSIPSIAERRGSNPPPRMLLPSSVTESSHPHRSKIHVRSKSFSLPELDDNLLKDVDCKQADPASCPATI* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5124 645 PANTHER MKPA PROTEIN 26 604 - -
Amo13g5124 645 ProSitePatterns Tyrosine specific protein phosphatases active site. 191 201 IPR016130 GO:0016311|GO:0016791
Amo13g5124 645 Gene3D Protein tyrosine phosphatase superfamily 85 249 IPR029021 -
Amo13g5124 645 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 166 227 IPR000387 GO:0016311|GO:0016791
Amo13g5124 645 CDD DSP 108 242 - -
Amo13g5124 645 MobiDBLite consensus disorder prediction 516 536 - -
Amo13g5124 645 SMART dsp_5 107 246 IPR020422 GO:0006470|GO:0008138
Amo13g5124 645 ProSiteProfiles Dual specificity protein phosphatase domain profile. 107 249 IPR020422 GO:0006470|GO:0008138
Amo13g5124 645 MobiDBLite consensus disorder prediction 32 46 - -
Amo13g5124 645 MobiDBLite consensus disorder prediction 1 50 - -
Amo13g5124 645 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 26 604 - -
Amo13g5124 645 Gene3D Severin 259 357 IPR029006 -
Amo13g5124 645 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 100 248 IPR029021 -
Amo13g5124 645 SUPERFAMILY Actin depolymerizing proteins 253 351 - -
Amo13g5124 645 Pfam Dual specificity phosphatase, catalytic domain 115 245 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5124 Amo-Chr13 150824743 150826950 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5124 1 143 Protein tyrosine phosphatase (PTP) family AT3G55270 41.081 7.09e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5124 - - lja:Lj6g3v0574850.1 731.865