Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5109 ATGCTAGAGACTGGTGGTGCTGCTGCACCTGATTCTGAGCTCACTTTGGACACTGCAAATTGCACGCAACGAAGCTCTAACAGCACCCAAAGCAACTGCAGCACCAGCTTCAGCCGTCTCTCCTTTGACCTCGTCCCCCCCTCTTCGCCGGAAAATCTTTCCCTCAAGCCTCACCGCTCCTCCGACTTTGCCTATTCCGCCATCCTCCGCCGCAAGACGGCCCTCACCTTTCACGACTTCTGCCTCATCCGCCGCATCGGCGCCGGAGACATCGGCACAGTCTACCTCTGCCGCCTCCGCAACAGTGACAACAAAGACGAAGAAGAAGAAAAACTTAATCCGAACTGCCTGTACGCTATGAAGGTAGTGGACAAAAACGCCGTGGCACTAAAGAAAAAATCACAGAGAGCCGAAATGGAGAGAAGGATCCTGAAGATGCTGGACCATCCTTTCCTCCCTACCCTCTACGCGGAGTTCGAAGCCTCGCACTTCTCTTGCATCGTCATGGAGTTTTGCTCCGGTGGAGACTTGCACTCCCTCCGCCACAAGTTCCCTCACAATCGTTTTCCCTTAACTTCCGCAAGGTTTTATGCTGCTGAAGTGTTGGTGGCATTAGAGTACCTTCACATGCTGGGAATCATTTACAGGGATCTCAAACCCGAGAACGTGTTAGTCAGATCAGACGGTCACATCATGCTCTCCGATTTTGATCTTTCTCTCTGCTCAGATGCAATCCCAGCCGTTCAATCCTCTGATTGCTTCCACGATACTTCCTTCCCATCCGCATTGCAATACTCTGCCACACACACTACCCCGTTTTCGTGCTTCCCCAATCGGATGTTCCGATCACGTAAAGTCCAAACCGTTCAACCAGACCGGCTCTTCGTGGCCGAACCGGTCTCCGCCCGGTCATGCTCTTTCGTTGGGACGCACGAGTATGTCTCGCCGGAGGTAGCAGCCGGTGGATCACACGGCAATGCCGTGGACTGGTGGTCATTCGGGGTATTCATCTACGAGCTAATATACGGTCGTACGCCGTATGTGGCTCAATCGAACGAAGCTACACTGCGAAACATCATAAAGAATCCCCTGAGGTTCCCTACGGCCACGCCCTCTAGCGCGCTTGAGCATCACGCGCGGGACCTCATCTGCGGCTTGCTTCACAAGGACCCTGGTCAGAGGCTGGGTTCGAAGCGCGGCGCTGCTGACGTCAAGAAGCATCCGTTTTTCAAAGGGCTCAACATGGCGCTGATTCGCATGTTGACGCCACCACAAGTCCCCGGCTTGAAAAGACACAAAACGACGTCGTGGCTGACAAAGGACGATAGTAATAATCTTTTCAGCAACAGTAACAAACAGTATTCTACGGCGTCGTTTGACTATTTCTTTTGA 1392 0.5302 MLETGGAAAPDSELTLDTANCTQRSSNSTQSNCSTSFSRLSFDLVPPSSPENLSLKPHRSSDFAYSAILRRKTALTFHDFCLIRRIGAGDIGTVYLCRLRNSDNKDEEEEKLNPNCLYAMKVVDKNAVALKKKSQRAEMERRILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKFPHNRFPLTSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVQSSDCFHDTSFPSALQYSATHTTPFSCFPNRMFRSRKVQTVQPDRLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWSFGVFIYELIYGRTPYVAQSNEATLRNIIKNPLRFPTATPSSALEHHARDLICGLLHKDPGQRLGSKRGAADVKKHPFFKGLNMALIRMLTPPQVPGLKRHKTTSWLTKDDSNNLFSNSNKQYSTASFDYFF* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5109 463 MobiDBLite consensus disorder prediction 15 35 - -
Amo13g5109 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Amo13g5109 463 MobiDBLite consensus disorder prediction 1 35 - -
Amo13g5109 463 SMART serkin_6 80 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5109 463 SUPERFAMILY Protein kinase-like (PK-like) 58 438 IPR011009 -
Amo13g5109 463 ProSiteProfiles Protein kinase domain profile. 80 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5109 463 Gene3D Transferase(Phosphotransferase) domain 1 303 428 - -
Amo13g5109 463 Pfam Protein kinase domain 83 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5109 463 Pfam Protein kinase domain 304 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5109 463 Gene3D Transferase(Phosphotransferase) domain 1 172 240 - -
Amo13g5109 463 Gene3D Phosphorylase Kinase; domain 1 78 171 - -
Amo13g5109 463 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 463 - -
Amo13g5109 463 PANTHER FLIPPASE KINASE 1-RELATED 1 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5109 Amo-Chr13 150633471 150635236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5109 11 462 AGC Kinase Gene Family AT2G34650 65.577 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Amo13g5109 Pkinase 5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5109 - - gmx:100795536 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5109 13 150633471 150635236 Amo13g5109 13 150633471 150635236 ECH