Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5106 ATGAAACAGTTCAAATTGGGTGCCAAAGAGGATAATTCTCTTAGGCACAAACCAAAAATGGAAAGTGCTGTTGAACCTCCTAGCAGTCCGCGACACAGAGATGTATCAGCCAGGTGGAATCCACTTGAAGCATGTAGGCCTAGAATTGACGAAGCTCCTGTGTTTTATCCTACTATTGAGGAATTTGAAGATACTATTGGCTTCATAGCTAAGATCCGCCCCCAGGCTGAATCCTACGGCATATGTAGGATTATACCCCCAACTTCCTGGGTTCCACCGTGTCCGCTCAAAGAGAAGCATGTGTGGGAAAATGCTAGATTCCCTACCCGTATTCAACAAATTGACTTGCTTCAGAATAGAGAGCCAATGAGAAAGAAAAGTAAGGGAAGGAAGCGAAAGCGTAGAAAGCAATCAAAAATGGGCTCATGTAGGAGAAATGAAAAGCCTAGTTCGGAAGCTGATGTTACTTCCGAGCCTGAAGAGAAATTTGGATTCCAATCAGGTTCAGATTTCACACTCAAGGATTTTGAGCAATATGATAGACTTTTTAAGGATTCCTACTTTGGCCTGAATGATCCCACCGGAGATCGAAAGATTGGTGATAATGATCAGCAGAAGAGATGGGAGCCCTCTGTGGAGGCAATTGAGGGCGAATATTGGCGGATAGTAGAGCAACCTACAGATGAAGTTGAGGTCTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTCCCAAAGTCATCATCCTTTACTAAGAGCGCAGATCAATATACCATGTCTGGTTGGAATCTGAATAACTTCCCAAAATTGCCAGGCTCTGCATTATGTTACGAGGGAAGTGATATCTCGGGTGTTCTAGTTCCATGGTTATACGTTGGAATGTGCTTTTCAACATTTTGCTGGCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCATTGGGGCGAGCCAAAAATATGGTATGGTGTACCTGGAAGCCATGCCACAGCTTTGGAGGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAGCAACCAAATCTACTCAATGAATTGGTGACTCTCTTATCTCCTTCAATTCTTAAATCTGAAGGTGTCCCCGTATATCGCGCTGTCCAGCATTGTGGAGAATTTGTTGTTACTTTTCCAAGGGCATACCACTCTGGCTTCAACTGTGGCTTCAACTGTGCAGAGGCTGTGAATGCGGCTCCTGTCGATTGGTTTTTGCATGGCCAGAATGCTGTTGAGCTTTACAGTATGCAGCGTCGTAAGACATCATTATCGCATGACAAATTGTTATTTGGATCAGCTCAGGAAGCTGTAAGAGCCCTGTCAGATCTAACTCTTCACGGAAAAGAAAATGTAAAAAATTTTAAATGGAAAAGTTTCTGTGGGAAAGATGGAGTTCTGACCAAGGCACTTAAGATGAGGATAAAGATGGAAAAGGAGAGGCTTGACTTTCTGGCTCGTTTAAAGAGGTTTCAGATGGATGATGACTTTGATTTGCACAAGGAAAGAGAGTGCTTTTCTTGTTTCTATGATTTGCATCTATCTGCTGTTGGATGCAAGTGTTCTCCTGACCGTTATTTTTGTCTTAGACACTCAAATGTGCGTTGCTCGTGTACAATGGATGAAAGATTTGTTCTGTTTCGTTATACTACAGAAGAGCTAACTACATTGGTTGAAGCACTAGAAGGAGACTTGCATGCTATTGAAGTGTGGGAAAATCGAAGTTCTGGAATGGCTTCTGCTAATGCTGAAGATGCTTGCAAAAAATTGGTCATGGACGATGAAGCTATGGTGGAGCAGGAGCTACCTATGGATTTGAACACTGATCTTTTGTCTGGTGAGCATGATTTGCTGCATATTTCTGATAGTAAAGGTGACGTCTGCTATTCAGTGGCGAAAAAGGAACGAGACAATATGGAACTTGGAGCTGGTGATATCCTATCAGACTCAGAGAATAAAGGTTTTTCACCATGTTCAAGAGATGTTGAAAATTTCTTTTCACTTGATGGCTATAAATTATTCGGGGTTGATCTGCAAATGCATTCAGATTCAGGTGAGCAGCTCAACAGTGCATTTAAAGAGGGAGATATAGACACCTTTGATAAAACTATATCACTGACAAACCAAAGCTTCTTGATCCAAGAGTTTGGTAATTCTGTTGAGCTTGTAAGTTTGGGCTCAATTTTGCATGGGAAGAGGTGGTGCAATGAACGTGCAATATATCCAAAAGGATTCAAGAGCCGCGTTAAGTTCTTTAGTATTCTTGATCCAACAAGACCCTGTTATTATGTTTCTGAAATTTCTGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTACCATGGAAGAACATCCAACTGAAGCTTTCACAAACACATCAGCGGATAAGTGTTGGGAAACAATTCTTGACAGACTAAACAGTGAGATCGAGAGGTGTAAGAGTCTAGGTGAACAAGAACTCCCTCCTTTGGAGGTTTTGCAAAGCATTAATGGTCATGAAATGTTCGGATTCCTTAAGCCATCCATTATTCAGGCCATTGAAGCTCAAGATCCCAGTCATCAATGTGTAGAGTACTGGCATCACAAAGAACTTGCCTCTGAATCTTCAGGCAGTGGAAATGATGCCTCTAAGTGCTCAAATGGTTCAAACAACTCTCTGGGTGATGTCAAGACCAAACTTTTCGGCTTCGATTTGATAAAGCAGGAGCAAGAAGATAACATAGAAGGACATTTTCATTCATTTGAAGAGATGAAGTCATTGCTACAAGGATTCCTAAAAAAGGCCAGTCCTGCTGAGTTGAGTGCAATGCTCAAGTTATTTAGCTCTGATTCACATGTTATTCAATGGAGAGCGGCATTCGTAGCGTTGATCGAAGAGATCCAGAAAGGGTGTAGATAA 2925 0.4188 MKQFKLGAKEDNSLRHKPKMESAVEPPSSPRHRDVSARWNPLEACRPRIDEAPVFYPTIEEFEDTIGFIAKIRPQAESYGICRIIPPTSWVPPCPLKEKHVWENARFPTRIQQIDLLQNREPMRKKSKGRKRKRRKQSKMGSCRRNEKPSSEADVTSEPEEKFGFQSGSDFTLKDFEQYDRLFKDSYFGLNDPTGDRKIGDNDQQKRWEPSVEAIEGEYWRIVEQPTDEVEVYYGADLETGALGSGFPKSSSFTKSADQYTMSGWNLNNFPKLPGSALCYEGSDISGVLVPWLYVGMCFSTFCWHVEDHHLYSLNYLHWGEPKIWYGVPGSHATALEDAMRKHLPDLFEEQPNLLNELVTLLSPSILKSEGVPVYRAVQHCGEFVVTFPRAYHSGFNCGFNCAEAVNAAPVDWFLHGQNAVELYSMQRRKTSLSHDKLLFGSAQEAVRALSDLTLHGKENVKNFKWKSFCGKDGVLTKALKMRIKMEKERLDFLARLKRFQMDDDFDLHKERECFSCFYDLHLSAVGCKCSPDRYFCLRHSNVRCSCTMDERFVLFRYTTEELTTLVEALEGDLHAIEVWENRSSGMASANAEDACKKLVMDDEAMVEQELPMDLNTDLLSGEHDLLHISDSKGDVCYSVAKKERDNMELGAGDILSDSENKGFSPCSRDVENFFSLDGYKLFGVDLQMHSDSGEQLNSAFKEGDIDTFDKTISLTNQSFLIQEFGNSVELVSLGSILHGKRWCNERAIYPKGFKSRVKFFSILDPTRPCYYVSEISDAGFLGPLFKVTMEEHPTEAFTNTSADKCWETILDRLNSEIERCKSLGEQELPPLEVLQSINGHEMFGFLKPSIIQAIEAQDPSHQCVEYWHHKELASESSGSGNDASKCSNGSNNSLGDVKTKLFGFDLIKQEQEDNIEGHFHSFEEMKSLLQGFLKKASPAELSAMLKLFSSDSHVIQWRAAFVALIEEIQKGCR* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5106 974 MobiDBLite consensus disorder prediction 142 159 - -
Amo13g5106 974 MobiDBLite consensus disorder prediction 1 35 - -
Amo13g5106 974 Pfam JmjC domain, hydroxylase 292 407 IPR003347 -
Amo13g5106 974 Pfam jmjN domain 53 86 IPR003349 -
Amo13g5106 974 Gene3D - 725 865 - -
Amo13g5106 974 ProSiteProfiles JmjN domain profile. 52 93 IPR003349 -
Amo13g5106 974 ProSiteProfiles FYR domain FYRN motif profile. 721 779 IPR003888 GO:0005634
Amo13g5106 974 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 597 972 - -
Amo13g5106 974 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 7 596 - -
Amo13g5106 974 ProSiteProfiles JmjC domain profile. 259 425 IPR003347 -
Amo13g5106 974 Pfam F/Y-rich N-terminus 728 776 IPR003888 GO:0005634
Amo13g5106 974 MobiDBLite consensus disorder prediction 115 166 - -
Amo13g5106 974 SMART cupin_9 259 425 IPR003347 -
Amo13g5106 974 SMART fyrn_3 735 779 IPR003888 GO:0005634
Amo13g5106 974 MobiDBLite consensus disorder prediction 124 141 - -
Amo13g5106 974 ProSiteProfiles FYR domain FYRC motif profile. 781 871 IPR003889 GO:0005634
Amo13g5106 974 PANTHER LYSINE-SPECIFIC DEMETHYLASE 597 972 - -
Amo13g5106 974 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 596 - -
Amo13g5106 974 SMART JmjN_1 51 92 IPR003349 -
Amo13g5106 974 SMART fyrc_3 785 879 IPR003889 GO:0005634
Amo13g5106 974 SUPERFAMILY Clavaminate synthase-like 268 446 - -
Amo13g5106 974 Pfam C5HC2 zinc finger 514 565 IPR004198 -
Amo13g5106 974 Pfam F/Y rich C-terminus 783 867 IPR003889 GO:0005634
Amo13g5106 974 Gene3D Cupin 37 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5106 Amo-Chr13 150555710 150561076 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5106 60 970 JUMONJI Transcription Factor Family AT4G20400 46.617 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo13g5106 JmjC 8e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5106 - - mnt:21408610 1090.1