Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5094 ATGCCAAATGGTAGCCTTGAAGACCATCTCTTCTCTTCCATGGACAACCGAAATATGAAGAAATCACTTACTTGGTCTCAAAGAAAGAGCATAATCTTGGATGTGGCAAATGGGTTGGTCTATTTGCACTTTGGAGTTAAACCTGCAATCTATCACAGAGATATCAAAACCACCAATATTCTGCTTGATGCAGGTATGAATGCAAGAGTTGCGGATTTCGGGTTGGCTAAACAAAACATTGAAAGTAGGTCTCTGATAAATACAAGAGTTGCTGGAACTCATGGGTACCTGGCACCAGAATATGCACTTTATGGCCAATTATCTGAAAAGAGTGATGTCTATAGTTTTGGTGTGGTTATATTGGAAATATTGTGTGGAAGAAAAGCTCTTGATTTATCTTCATCTGGAACATCTGCATTCTTTATCTCAGATTGGGTTTGGTCATTGCTGAAATCTGGTAACTTAGAATCAGCTTTGGATGCTTCTATGTTAATAGATGAAAACCTTACTAGTAGGAAAATAATAGAAAGATTCTTAATGGTTGGTGTTCTGTCTTCTCATGTAGTAGCTGATTCAAGGCCAACAATTTTGGATGCTTTGAAGATGTTAGAAGGGGATATTGAGATTCCACCAATTCCAGATAGGCCAATGGCTCTTGCACACCATGTTTTTCCCGTAGTTATTTAG 687 0.3828 MPNGSLEDHLFSSMDNRNMKKSLTWSQRKSIILDVANGLVYLHFGVKPAIYHRDIKTTNILLDAGMNARVADFGLAKQNIESRSLINTRVAGTHGYLAPEYALYGQLSEKSDVYSFGVVILEILCGRKALDLSSSGTSAFFISDWVWSLLKSGNLESALDASMLIDENLTSRKIIERFLMVGVLSSHVVADSRPTILDALKMLEGDIEIPPIPDRPMALAHHVFPVVI* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5094 228 Pfam Protein kinase domain 3 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5094 228 SUPERFAMILY Protein kinase-like (PK-like) 1 204 IPR011009 -
Amo13g5094 228 PANTHER OS01G0253100 PROTEIN 1 224 IPR045271 GO:0004714|GO:0006468
Amo13g5094 228 Gene3D Transferase(Phosphotransferase) domain 1 1 209 - -
Amo13g5094 228 SMART serkin_6 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5094 228 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 1 224 - -
Amo13g5094 228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 50 62 IPR008271 GO:0004672|GO:0006468
Amo13g5094 228 ProSiteProfiles Protein kinase domain profile. 1 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5094 Amo-Chr13 150424375 150425255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5094 1 221 Receptor kinase-like Gene Family AT1G11050 68.889 3.07e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Amo13g5094 Pkinase 2.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5094 - - lja:Lj0g3v0288509.1 343.584