Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5090 ATGGATAATAATAATAATAATATCAAGAAAGAACAAGTTTTCTTACATGGTGACTTGGATATTTATGTAATAGAAGCAAAATCTCTTCCAAACTTGGATCTTTCTTCAGAAGCAGTAAGAAGATGCCTGAGCATGGGGAACTTCTTCACATCACCATTCTCAAAGAAAATGAGGAGTTCAGGGAAAGATAAGATGATAACAAGTGACCCTTATGTCTCTGTAGTCATAGCAGGTGCTACCATAGCTCAAACTAGAGTGATTCCAAACAGCGAAAACCCGATTTGGGACGAGCATTTCATCATGCCGGTTGCTCACCCTGCTCACAAGATTGAGTTCATTGTGAAGGACAATGATGTTCTTGGTGCTGAGTTAATTGGTGTAGTTGATATTCCTGTTCAGAGGGTAGTCTCAGGGGAAAACATAGATGATTGGTTTCCAATCATCGGACAGTACTCGAATTGCTTGCAGGCTTATCCTGAGCTGCATATTTCGATTCAGTTTTGGCCGGTCGGAAGCGTTAAGGATGATATTTGTAGTGGTGATAGTGGAGTTCCTAAGACATATTTTCCATTGAGGAAAGGAGGGAATGTGACTCTGTATCAAGATGCACATGTTCCTGATGGAATGCTACCTGATATTGAATTGGATGGTGGAAAAGTGTTTCAAGCTGGTAAATGTTGGGAGGATATTTGCCATGCAATTTTGGAAGCTCATCATTTGATATATGTTATTGGTTGGTCAGTTTATCATCCAATAAAGCTTGTTAGAGAGCCAACAAGGCCATTGCCTTGTGGTGGAGAGCTTTCACTTGGAGAGTTGTTGAAGTACAAATCACAAGAAGGTCTTAGAGTTGTTATGCTCATTTGGGATGACAGAACTTCACATGACAAGTTCCTTATCAAAACTGATGGAGTGATGCAAACTCATGATGAGGAAACCAAAAAGTTCTTTAAAAACTCTGCTGTTCATTGCGTGCTATCTCCGCGTTATGCAAGCAATAAGCTCAGTATTTTCAAGCAACAGGTTGTGGGAACCCTCTTTACTCATCATCAGAAATGTGTGCTTGTTGACTCACAAGGTGCAGGGAATAATCGGAAAATATCTGCTTTTATTGGTGGTCTGGATCTCTGTGATGGCAGATATGACACACCTCAGCATAGGCTATTTCGCGATTTAGAAACCGTTTACAAAGAGGATTTTCATAATCCTACATTTCAAGTAGGTTCTAGTGGAGGTGGACCAAGAGAGCCATGGCATGACATGCATTGCAAGGTTGAAGGGCCAGCAGCTTATGATATATTAACCAATTTTGAACAAAGATGGAGGAAAGCCAAAAAATGGCGAGACTTTAGACTCAACAAGGTCACGAATTGGCACGACGATGCATTGCTTAGGCTAGACCGGATATCATGGATTGTCAGTCCATCTTCGAGTTCTGGTGATGATAAAGCTATCCAGGTGACCGACGAAAATGATCCTGAAACTTGGAATGTGCAGGTATTTCGGTCCATAGATTCAGGATCCGTGAAGGGTTTTCCAAAGGATTTCGACAAGGCTCAGTCTCAGAATCTTTTATGTGGAAAGAATTTAAAAGTAGACCAAAGCATTCATACTGCTTATGTTAAAGCAATAAGATCAGCTCAACACTTCATTTATATTGAGAATCAGTATTTTCTGGGCTCATCATATCATTGGCCTTCATATGAAAAAGCAGGTGCAAATCACTTGATTCCAATGGAGCTGGCCTTAAAAATTTCTAGCAAGATCCGAGCGAATGAACGTTTTGCTGTATACATAGTTATACCAATGTGGCCAGAGGGGGTTCCAACAAGTAATGCTGTCCAGGAAATCTTATTCTGGCAGGGACAAACAATGGCTATGATGTATAAGATCATTGCAGATGCACTTAAAGATGCTCAAGTCTCCCATATATATCATCCACATGATTTTCTCAACTTTTTCTGCCTTGGAAATAGAGAACCTGAGGCCACACCAACTCCATCACCACATAGAGAATCATCTGAAAACCGTGGTTTGGGATCAGTCAAGAAATTCAAACGTTTCATGATTTATGTTCATGCCAAAGGAATGATAGTCGATGATCAATACGTAATCATTGGATCAGCAAACATTAACCAGAGATCAATGGATGGTTCAAGAGACACAGAAATAGCCATGGGTGCTTATCAACCAAAATATACTTGGAAAGAAAAAAACTGGCATCCACATGGCCAGGTGTATGGATACCGGATGTCGCTGTGGGCCGAGCACCTTGGCAGTCTTGATGACAGATTCAAAGAGCCCCATAGCTTGGAATGTGTGAGGACTATGAACAACATAGCCAAACAAAACTGGAACACATTTGCATCCGATAGAATCAGTCATATGAAAGGGCATTTGATGCTGTATCCAGTTAAGGTTGGCAGAGATGGAAAAGTCACTGCACTTGATAATTGTGATTCATTTCCTGATGTTGGTGGCAAAATTCTTGGAGCTGCAAATTCTCTTCCAGACACCTTAACTACGTGA 2529 0.4077 MDNNNNNIKKEQVFLHGDLDIYVIEAKSLPNLDLSSEAVRRCLSMGNFFTSPFSKKMRSSGKDKMITSDPYVSVVIAGATIAQTRVIPNSENPIWDEHFIMPVAHPAHKIEFIVKDNDVLGAELIGVVDIPVQRVVSGENIDDWFPIIGQYSNCLQAYPELHISIQFWPVGSVKDDICSGDSGVPKTYFPLRKGGNVTLYQDAHVPDGMLPDIELDGGKVFQAGKCWEDICHAILEAHHLIYVIGWSVYHPIKLVREPTRPLPCGGELSLGELLKYKSQEGLRVVMLIWDDRTSHDKFLIKTDGVMQTHDEETKKFFKNSAVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLVDSQGAGNNRKISAFIGGLDLCDGRYDTPQHRLFRDLETVYKEDFHNPTFQVGSSGGGPREPWHDMHCKVEGPAAYDILTNFEQRWRKAKKWRDFRLNKVTNWHDDALLRLDRISWIVSPSSSSGDDKAIQVTDENDPETWNVQVFRSIDSGSVKGFPKDFDKAQSQNLLCGKNLKVDQSIHTAYVKAIRSAQHFIYIENQYFLGSSYHWPSYEKAGANHLIPMELALKISSKIRANERFAVYIVIPMWPEGVPTSNAVQEILFWQGQTMAMMYKIIADALKDAQVSHIYHPHDFLNFFCLGNREPEATPTPSPHRESSENRGLGSVKKFKRFMIYVHAKGMIVDDQYVIIGSANINQRSMDGSRDTEIAMGAYQPKYTWKEKNWHPHGQVYGYRMSLWAEHLGSLDDRFKEPHSLECVRTMNNIAKQNWNTFASDRISHMKGHLMLYPVKVGRDGKVTALDNCDSFPDVGGKILGAANSLPDTLTT* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5090 842 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 345 380 IPR001736 GO:0003824
Amo13g5090 842 PIRSF PLD_plant 4 842 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Amo13g5090 842 SUPERFAMILY Phospholipase D/nuclease 534 773 - -
Amo13g5090 842 Pfam C2 domain 17 147 IPR000008 -
Amo13g5090 842 Gene3D C2 domain 13 167 IPR035892 -
Amo13g5090 842 SUPERFAMILY Phospholipase D/nuclease 183 449 - -
Amo13g5090 842 CDD C2_plant_PLD 13 167 - -
Amo13g5090 842 PANTHER PHOSPHOLIPASE D 10 842 IPR015679 -
Amo13g5090 842 Pfam Phospholipase D C terminal 762 832 IPR024632 -
Amo13g5090 842 Gene3D Endonuclease Chain A 219 463 - -
Amo13g5090 842 Pfam PLD-like domain 630 724 IPR025202 -
Amo13g5090 842 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Amo13g5090 842 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 688 715 IPR001736 GO:0003824
Amo13g5090 842 Pfam Phospholipase D Active site motif 346 380 IPR001736 GO:0003824
Amo13g5090 842 PANTHER PHOSPHOLIPASE D 10 842 - -
Amo13g5090 842 Gene3D Endonuclease Chain A 493 746 - -
Amo13g5090 842 SMART pld_4 688 715 IPR001736 GO:0003824
Amo13g5090 842 SMART pld_4 345 380 IPR001736 GO:0003824
Amo13g5090 842 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 15 170 IPR035892 -
Amo13g5090 842 SMART C2_3c 18 144 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5090 Amo-Chr13 150362834 150366807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5090 13 841 Phospholipase D Gene Family (Wang group) AT2G42010 54.186 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5090 K01115 - gmx:100779740 1392.1