Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5076 ATGGATAATAATAATAATATCAAGAAAGAACAAGTCTTCTTACATGGTGACTTGGATATTTATGTAATAGAAGCAAAATCTCTTCCAAACTTGGATCTTTCTTCAGAAGCAGTAAGAAGATGCCTGAGCATGGGGAACTTCTTCACATCACCATTCTCAAAGAAAATGAGGAGTTCAGGGAAAGATAAGATGATAACAAGTGACCCTTATGTCTCTGTAGTCATAGCAGGTGCTACCATAGCTCAAACTAGAGTGATTCCAAACAGCGAAAACCCGATTTGGGACGAGCATTTCATCATGCCGGTTGCTCACCCTGCTCACAAGATTGAGTTCATTGTGAAGGACAATGATGTTCTTGGTGCTGAGTTAATTGGTGTAGTTGATATTCCTGTTCAGAGGGTAGTCTCAGGGGAAAACATAGATGATTGGTTTCCAATCATCGGACAGTACTCGAATTGCTTGCAGGCTTATCCTGAGCTGCATATTTCGATTCAGTTTTGGCCGGTCGGAGGCGTTAAAGACGATATTTGTAGTGGTGATAGTGGAGTTCCTAAGACATATTTTCCATTGAGGAAAGGAGGGAATGTGACTCTGTATCAAGATGCACATGTTCCTGATGGAATGCTACCTGATATTGAATTGGATGGTGGRAAAGTGTTTCAAGCTGGTAAATGTTGGGAGGAYATTTGCCATGCAATTTTGGAAGCTCATCATTTGATATATGTTATTGGTTGGTCAGTTTATCATCCAATAAARCTTGTTAGAGAGCCAACAAGGCCATTGCCTTGTGGTGGAGAGCTTTCACTTGGAGAGTTGTTGAAGTACAAATCACAAGAAGGTCTTAGAGTTGTTATGCTCATTTGGGATGACAGAACTTCACATGACAAGTTCCTTATCAAAACTGATGGAGTGATGCAAACTCATGATGAGGARACCAAAAAGTTCTTTAAAAACTCTGCTGTTCATTGCGTTGTGGGAACCCTCTTTACTCATCATCAGAAATGTGTGCTTGTTGACTCACAAGGTGCAGGGAATAATCGGAAAATATCTGCTTTTATTGGTGGTCTGGATCTCTGTGATGGCAGATATGAYACACCTCAGCATAGGCTATTTCGCGATTTAGAAACCGTTTACAAAGAGGATTTTCATAATCCTACATTTCAAGTAGGTTCTAGTGGAGGTGGACCAAGAGAGCCATGGCATGACATGCATTGCAAGGTTGAAGGGCCAGCAGCTTATGATATATTAACCAATTTTGAACAAAGATGGAGGAAAGCCAAAAAATGGCGAGACTTTAGACTCAACAAGGTCACGAATTGGCACGACGATGCATTGCTAAGGCTAGACCGGATATCATGGATTGTCAGTCCATCTTCGAGTTCTGGTGATGATAAAGCTATCCAGGTGACCGATGAAAATGATCCTGAAACTTGGAATGTGCAGGTATTTCGGTCCATAGATTCAGGATCCGTGAAGGGTTTTCCAAAGGATTTCGACAAGGCTCAGTCTCAGAATCTTTTATGTGGAAAGAATTTAAAAGTAGACCAAAGCATTCATACTGCTTATGTTAAAGCAATAAGATCAGCTCAACACTTCATTTATATTGAGAATCAGTATTTTCTGGGCTCATCATATCATTGGCCTTCATATGAAAAAGCAGGTGCAAATCACTTGATTCCAATGGAGTTGGCCTTAAAAATTTCTAGCAAGATCCGAGCGAATGAACGTTTTGCTGTATACATAGTTATACCAATGTGGCCAGAGGGGGTTCCAACAAGTAATGCTGTTCAGGAAATCTTATTCTGGCAGGGACAAACAATGGCTATGATGTATAAGATCATTGCAGATGCACTTAAAGATGCTCAAGTCTCCCATATATATCATCCACATGATTTTCTCAACTTTTTCTGCCTTGGAAATAGAGAACCTGAGGCCACACCAACTCCATCACCACATAGAGAATCATCTGAAAACCGTGGTTTGGGATCAGTCAAGAAATTCAAACGTTTCATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGATCAATACGTAATCATTGGATCAGCAAACATTAACCAGAGATCAATGGATGGTTCAAGAGACACAGAAATAGCCATGGGTGCTTATCAACCAAAATATACTTGGAAAGAAAAAAAGTCGCAGCCACATGGCCAGGTGTATGGATACCGGATGTCGCTGTGGGCCGAGCACCTTGGCAGTCTTGATGACAGATTCAAAGAGCCCCATAGCTTGGAATGTGTGAGGACTATGAACAACATAGCCAAACAAAACTGGAACACATTTGCATCCGATAGAATCAGTCATATGAAAGGGCATTTGATGCTGTATCCAGTTAAGGTTGGCAGAGATGGAAAAGTCACTGCACTTGATAATTGTGATTCATTTCCTGATGTTGGTGGCAAAATTCTTGGAGCTGCAAATTCTCTTCCAGACACCTTAACTACGTGA 2475 0.4065 MDNNNNIKKEQVFLHGDLDIYVIEAKSLPNLDLSSEAVRRCLSMGNFFTSPFSKKMRSSGKDKMITSDPYVSVVIAGATIAQTRVIPNSENPIWDEHFIMPVAHPAHKIEFIVKDNDVLGAELIGVVDIPVQRVVSGENIDDWFPIIGQYSNCLQAYPELHISIQFWPVGGVKDDICSGDSGVPKTYFPLRKGGNVTLYQDAHVPDGMLPDIELDGGKVFQAGKCWEDICHAILEAHHLIYVIGWSVYHPIKLVREPTRPLPCGGELSLGELLKYKSQEGLRVVMLIWDDRTSHDKFLIKTDGVMQTHDEETKKFFKNSAVHCVVGTLFTHHQKCVLVDSQGAGNNRKISAFIGGLDLCDGRYDTPQHRLFRDLETVYKEDFHNPTFQVGSSGGGPREPWHDMHCKVEGPAAYDILTNFEQRWRKAKKWRDFRLNKVTNWHDDALLRLDRISWIVSPSSSSGDDKAIQVTDENDPETWNVQVFRSIDSGSVKGFPKDFDKAQSQNLLCGKNLKVDQSIHTAYVKAIRSAQHFIYIENQYFLGSSYHWPSYEKAGANHLIPMELALKISSKIRANERFAVYIVIPMWPEGVPTSNAVQEILFWQGQTMAMMYKIIADALKDAQVSHIYHPHDFLNFFCLGNREPEATPTPSPHRESSENRGLGSVKKFKRFMIYVHAKGMIVDDQYVIIGSANINQRSMDGSRDTEIAMGAYQPKYTWKEKKSQPHGQVYGYRMSLWAEHLGSLDDRFKEPHSLECVRTMNNIAKQNWNTFASDRISHMKGHLMLYPVKVGRDGKVTALDNCDSFPDVGGKILGAANSLPDTLTT* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5076 824 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 169 IPR035892 -
Amo13g5076 824 SMART C2_3c 17 143 IPR000008 -
Amo13g5076 824 Gene3D C2 domain 12 166 IPR035892 -
Amo13g5076 824 Gene3D Endonuclease Chain A 475 725 - -
Amo13g5076 824 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 670 697 IPR001736 GO:0003824
Amo13g5076 824 PANTHER PHOSPHOLIPASE D 9 824 IPR015679 -
Amo13g5076 824 Pfam Phospholipase D C terminal 744 814 IPR024632 -
Amo13g5076 824 PIRSF PLD_plant 3 824 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Amo13g5076 824 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 327 362 IPR001736 GO:0003824
Amo13g5076 824 ProSiteProfiles C2 domain profile. 1 144 IPR000008 -
Amo13g5076 824 Pfam PLD-like domain 612 706 IPR025202 -
Amo13g5076 824 SUPERFAMILY Phospholipase D/nuclease 183 431 - -
Amo13g5076 824 Pfam C2 domain 16 146 IPR000008 -
Amo13g5076 824 Gene3D Endonuclease Chain A 218 445 - -
Amo13g5076 824 CDD C2_plant_PLD 12 166 - -
Amo13g5076 824 SUPERFAMILY Phospholipase D/nuclease 516 755 - -
Amo13g5076 824 PANTHER PHOSPHOLIPASE D 9 824 - -
Amo13g5076 824 Pfam Phospholipase D Active site motif 328 362 IPR001736 GO:0003824
Amo13g5076 824 SMART pld_4 327 362 IPR001736 GO:0003824
Amo13g5076 824 SMART pld_4 670 697 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5076 Amo-Chr13 150175298 150179224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5076 12 823 Phospholipase D Gene Family (Wang group) AT2G42010 53.488 0.0 912
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5076 K01115 - gmx:100779740 1345.1