Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5066 ATGACAGACCCGGATCCCTCCAAAAAGGTCGCCGATAGGTATCTGAAGCGTGAAATCCTTGGTGAAGGTACCTACGGAGTTGTATACAAAGCCATTGATACTCACACCGGACAAACCGTTGCCATTAAGAAAATTCGACTTGGCAAGCAGAAAGAAGGGGTCAACTTTACAGCACTCAGAGAAATTAAACTTCTTAAAGAGCTCAAAGATCCCAACATTATTGAGTTAATCGATGCATTCCCGCATAAAGGGAATTTACATCTTGTATTCGAATTCATGGAGACGGACCTTGAAGCCGTCATACGAGACCGAAATATTTTTCTTTCTCCAGCTGATACAAAATCCTACCTCCAAATGACGCTAAAGGGTCTTGCCTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCTCATGGACAGCTGAAACTTGCAGATTTTGGTTTGGCACGGATATTTGGAAGTCCGGATAGAAGGTTCACACATCAGGTGTTTGCTCGGTGGTACAGAGCACCTGAGCTATTATTTGGTGCGAAGCAATATGGTTCAGGGGTAGATGTTTGGGCTGCAGCTTGTATTTTTGCTGAACTTCTTCTCCGCCGACCCTTTTTGCAGGGTTCAAGTGATATCGATCAGTTAGGCAAGATTTTTGCAGCATTTGGCACTCCGACACCTGCTCAGTGGCCTGATATGGTATATCTTCCAGATTACGTTGAATATCAATGTGTTCCTGCCCCCCCTTTGCGTACTTTGTTTCCAACAGCAAGTGACGATGCTTTAGATCTATTGTCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAACAGGCACTAGAGCACAGATACTTTTCTTCTGCACCTCTGCCCACAGATCCAGAGAAGCTCCCTAGGCCAGCCCCCAAGAAGGAATCTAGGGCTTCTGATTTTGATTTGCAGCAGGGTCCTACTGTGTTATCACCTCCAAGAAAGTCTAGGAGAGTGATGCCTGGGCGTGATGGGTTCGAAGGAAATTCTTTTCAAGGAGTGAAGGATGATGATGGAAATTTCGGTGATTTCAGACAGACAGTTGGTGATAATACAGGCAAGAACCAACCAGTTCCAATGTCAGTAGACTTTTCTATCTTTGGATTAAAATCTCCAAATAGACCTACAATTAACAGGTAA 1197 0.4344 MTDPDPSKKVADRYLKREILGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGSHGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPAQWPDMVYLPDYVEYQCVPAPPLRTLFPTASDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPTDPEKLPRPAPKKESRASDFDLQQGPTVLSPPRKSRRVMPGRDGFEGNSFQGVKDDDGNFGDFRQTVGDNTGKNQPVPMSVDFSIFGLKSPNRPTINR* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5066 398 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Amo13g5066 398 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5066 398 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Amo13g5066 398 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5066 398 MobiDBLite consensus disorder prediction 294 379 - -
Amo13g5066 398 PANTHER CELL DIVISION PROTEIN KINASE 9 354 - -
Amo13g5066 398 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Amo13g5066 398 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 354 - -
Amo13g5066 398 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Amo13g5066 398 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5066 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Amo13g5066 398 Gene3D Phosphorylase Kinase; domain 1 6 94 - -
Amo13g5066 398 MobiDBLite consensus disorder prediction 364 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5066 Amo-Chr13 150064216 150067035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5066 4 397 Core Cell Cycle Gene Families AT1G18040 72.843 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Amo13g5066 Pkinase 1.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5066 K02202 - gmx:100776618 723.391