LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g5065	ATGGCTGCTGATTCCTCTTCTGCCAATGCTTTCCTTGAAGAACTAGAGGCCCTCAGTGACTCCCTCTACAAATCACACACAACTCGAAGAACAGCTTCCCTTGTCCTGCCACGAACTTCATCTCCTTCTGTTCCATCTGCCCAAGAAGAAGATGTCAAAGTCAATGCAAAACCTCGATCACGCCGCCTGTCCTTGTCCCCATGGCGATCAAGGCCGAAGCTTGAGGATGCCAAGGCACCACCAACTACTCAGTCACCGGGAGAAACCAGAAAGCTAGATGAGTCGTCCGGTGACGGTGACAAGAAAGGGATTTGGAGCTGGAAGCCTATCCGGGCTTTGTCTCATATTGGAATGCAGAAACTAAGCTGTTTATTCTCCGTTGAAGTGGTTGCAGCACAAGGCCTTCCTTCTTCCATGAATGGCCTTAGGCTCTCTGTGTGTGTTAGAAAGAAAGAGACAAAGGACGGTGCTGTTAAGACCATGCCATCACGTGTTACACAAGGAGCTGCAGATTTCGAAGAGACTCTTTTCATCAGGTGCCATGTTTATGCCACCCAAGCTGGTGGAGCTGCAAAGCAGGTTAAGTTTGAGCCACGCCCCTTTTTGATATACCTTTTCGCAGTTGATGCTAAAGAGCTTGATTTTGGAAGAAGCTCGGTGGATTTGAGCGAGCTCATCAAAGAATCCATTGAGAAAAACCATGAAGGAACACGAGTTCGCCAATGGGACACAAGCTTCAGCTTGTCTGGAAAGGCAAAGGGAGGAGAACTTGTTCTCAAAATGGGATTCCAGATCATGCAGAAAGATGGTGGACTCGATATATATAATCAACTCGAGAATCCAAATTCAAATTCAAATTCCAAGACCAGCTCCAGCTCCAGCAAGTTGAGAAATTTCTCATCTTTTGCTCGCAAACAATCCAAGACGTCCTTCAGCATGCCTAGTCCCAGAATGACAAGCAAAAATGATGCACGAAGGCAGGCAGATATTCAAGGAATGGATGATTTGAATCTTGATGATCCAAACCCGAAACCTGAAAAGGTGGAGGATTTCGATCTTCCTGATTTCGAGGTTGTTGACAAAGGTGTTGAGGTTCAAGAGAAGGAAGAAGATGGAGGGGAATCTGAGAAACCTTTACCAGTCAAATCAACTCCTCCAGGTGAAGTTGTCAAGGAAATAGTCCATGATCATCTGCATCTCAATAGATTGAGTGAGCTTGATTCAATTGCCCAGCAGATAAAAGCTCTTGAGTCGATGATGGGAGAAGATGATAAGTATATGAAATTAGAGGACGAGACACAATCGCAAAGGCTAGATGCAGACGAAGAAACTGTGACGATGGAGTTTCTTCAGCTGCTTGAGGATCAAGACTTCAAAGGATACTCATTCAATCAACCTGAAATTCCACCATTACAACTTGAAGGACAGAAGGAATCTTCTTCTGCAGATGCTGAATCCAAGGTGTATCTGCCTGACCTTGGAAAGGGTTTGGGCTGTGTAGTTCAAACTAGAGATGGAGGCTACTTAGCTTCCATGAATCCATTAGATATGGCTGTGGAGAGGAAAGATACCCCAAAGCTAGCAATGCAGATGTCAAAGCCCTTTGTGTTGGAATCACATCAAAGCGTGACTGGCTTTGAGTTGTTTCAAAAACTGGCTGGTATTGGTCTTGATGAACTCAGCTCTCAAATTTTGTCATTGATGCCCATAGATGAACTTAGGGGCAAAACTGCAGAACAGGTGGCTTTTGAAGGCATTGCTTCTGCCATCATACATGGCAGGAGCAAGGAAGGAGCCAGTTCAAGCGCCGCTCGCATAGTTTCTTCCGTGAAAAGTATGGCAAATGCTATGAGCTCAGGAAGAAAAGAACGAATTTCGAGTGGCATTTGGAATGTGGATGAAGATCTGGTCAGTGCAGAGAAGCTTCTGGCTTTTGCAATGCAGAAGATTGAATCAATGGCAGTGGAAGCATTGAAAATTCAAGCAGAAATGGCTGAGGAAGAAGCTCCGTTTGAAGTTTCTGCACTCAGCTCAAAGAAAGGGGACATTGAGAGTGGGAAAGAGATTTTGGCTTCTGCTTCTTCACTTGAGGATTGGATCAAAGATAATGCAAGTTCTGAGAGTGAAGCAGAAAAGGCCACACTGATGTTGGTTGTCCAATTGAGGGATCCGCTGAGACGCTATGAAGCAGTTGGAGGGCCTATCATGCATGTGGGAGGCTTCAAGGTGAGGAGTGGCACAAAAAAGAATTCATGGGACAGTGAGAGACAGAGGCTAACTGCAATGCAATGGTTGGTCTCATATGGCTTTGGAAAGGCAGCAAAGAAAGGGAAGCAAGCATTGCAAAAGGGGCAAGACCTGTTATGGACTATTTCCTCCCGAATTGTGGCTGACATGTGGCTTAAAACCATGAGAAATCCAGATATCAAGCTTCTAAAGGATCCAGCTTGTGTTGTGGAAACGGGGCGGATTTCCCAAACCGGTGCAATGGCGACAGCTCAGCTAACAGCATCCTCAATTTCCTCGAGGAACGTGTCGTCTTTCGAAGGGCTTCGACCTTCGGCAGTTCAGTTCCCTTCCGTCGTCAGAATTGGAACCCTCACTCAAAGGTCCTTCCGGGGTTTGGTTGTGAAAGCCGCAACTGTTGTTGCTCCAAAGTACACTGCTATTAGGCCTCTTGGCGACAGAGTACTGGTTAAAATTAAGGAAGCAGAAGAGAAGACGGACGGAGGAATTCTACTTCCTTCAACTGCTCAAACAAAGCCACAGGGTGGTGAAGTTGTTGCTGTTGGAGAGGGGAAATCTGTTGGGAAGAGCAAAATAGAGATTAGTGTGCAGACTGGTGCACAAGTTGTGTATTCGAAGTATGCTGGTACTGAGGTGGAGTTCAATGGGGCAAAGCATCTTATACTGAAGGACGATGACATTGTTGGTATCCTCGAGACCGAAGAGATCAAGGATCTTAAACCGTTGAATGATAGAGTCTTAATACAGGTTGCACAAGCAGAGGACAAAACTGCAGGTGGTTTGTTGCTTACCGAAGCAACCAAGGAGAAACCTTCGATCGGAACGGTGATTGCGGTGGGCCCAGGGCCTCTTGATGAGGAAGGTAACAGGAAACCGTTGTCTGTTAATCCTGGGAACACAGTCTTGTACTCCAAATATGCTGGGAACGACTTCAAGGGAAAAGATGGTTCGGACTACATTGCATTGAGGGTCTCAGATATCATGGCTGTCCTTTCCTAG	3246	0.4606	MAADSSSANAFLEELEALSDSLYKSHTTRRTASLVLPRTSSPSVPSAQEEDVKVNAKPRSRRLSLSPWRSRPKLEDAKAPPTTQSPGETRKLDESSGDGDKKGIWSWKPIRALSHIGMQKLSCLFSVEVVAAQGLPSSMNGLRLSVCVRKKETKDGAVKTMPSRVTQGAADFEETLFIRCHVYATQAGGAAKQVKFEPRPFLIYLFAVDAKELDFGRSSVDLSELIKESIEKNHEGTRVRQWDTSFSLSGKAKGGELVLKMGFQIMQKDGGLDIYNQLENPNSNSNSKTSSSSSKLRNFSSFARKQSKTSFSMPSPRMTSKNDARRQADIQGMDDLNLDDPNPKPEKVEDFDLPDFEVVDKGVEVQEKEEDGGESEKPLPVKSTPPGEVVKEIVHDHLHLNRLSELDSIAQQIKALESMMGEDDKYMKLEDETQSQRLDADEETVTMEFLQLLEDQDFKGYSFNQPEIPPLQLEGQKESSSADAESKVYLPDLGKGLGCVVQTRDGGYLASMNPLDMAVERKDTPKLAMQMSKPFVLESHQSVTGFELFQKLAGIGLDELSSQILSLMPIDELRGKTAEQVAFEGIASAIIHGRSKEGASSSAARIVSSVKSMANAMSSGRKERISSGIWNVDEDLVSAEKLLAFAMQKIESMAVEALKIQAEMAEEEAPFEVSALSSKKGDIESGKEILASASSLEDWIKDNASSESEAEKATLMLVVQLRDPLRRYEAVGGPIMHVGGFKVRSGTKKNSWDSERQRLTAMQWLVSYGFGKAAKKGKQALQKGQDLLWTISSRIVADMWLKTMRNPDIKLLKDPACVVETGRISQTGAMATAQLTASSISSRNVSSFEGLRPSAVQFPSVVRIGTLTQRSFRGLVVKAATVVAPKYTAIRPLGDRVLVKIKEAEEKTDGGILLPSTAQTKPQGGEVVAVGEGKSVGKSKIEISVQTGAQVVYSKYAGTEVEFNGAKHLILKDDDIVGILETEEIKDLKPLNDRVLIQVAQAEDKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKPLSVNPGNTVLYSKYAGNDFKGKDGSDYIALRVSDIMAVLS*	1082

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Amo13g5065	1081	PANTHER	PLASTID MOVEMENT IMPAIRED PROTEIN	736	813	-	-
Amo13g5065	1081	SUPERFAMILY	GroES-like	888	981	IPR011032	-
Amo13g5065	1081	MobiDBLite	consensus disorder prediction	29	100	-	-
Amo13g5065	1081	Hamap	Co-chaperonin GroES [groES].	889	981	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5065	1081	Pfam	Chaperonin 10 Kd subunit	890	979	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5065	1081	Pfam	Chaperonin 10 Kd subunit	988	1079	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5065	1081	Pfam	N-terminal C2 in EEIG1 and EHBP1 proteins	118	265	IPR019448	-
Amo13g5065	1081	ProSitePatterns	Chaperonins cpn10 signature.	988	1012	IPR018369	GO:0005524\|GO:0006457
Amo13g5065	1081	PANTHER	PLASTID MOVEMENT IMPAIRED PROTEIN	4	736	-	-
Amo13g5065	1081	MobiDBLite	consensus disorder prediction	29	48	-	-
Amo13g5065	1081	MobiDBLite	consensus disorder prediction	276	321	-	-
Amo13g5065	1081	PRINTS	10kDa chaperonin signature	946	958	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5065	1081	PRINTS	10kDa chaperonin signature	967	980	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5065	1081	PRINTS	10kDa chaperonin signature	890	905	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5065	1081	PRINTS	10kDa chaperonin signature	912	933	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5065	1081	CDD	cpn10	988	1080	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5065	1081	SMART	Cpn10_2	987	1080	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5065	1081	SMART	Cpn10_2	889	980	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5065	1081	CDD	cpn10	890	980	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5065	1081	Hamap	Co-chaperonin GroES [groES].	987	1081	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5065	1081	PANTHER	PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1	736	813	IPR039614	-
Amo13g5065	1081	PANTHER	PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1	4	736	IPR039614	-
Amo13g5065	1081	MobiDBLite	consensus disorder prediction	276	386	-	-
Amo13g5065	1081	MobiDBLite	consensus disorder prediction	322	377	-	-
Amo13g5065	1081	Gene3D	GroES chaperonin	983	1081	IPR037124	GO:0006457
Amo13g5065	1081	Gene3D	GroES chaperonin	883	982	IPR037124	GO:0006457
Amo13g5065	1081	SUPERFAMILY	GroES-like	987	1080	IPR011032	-
Amo13g5065	1081	ProSitePatterns	Chaperonins cpn10 signature.	890	914	IPR018369	GO:0005524\|GO:0006457
Amo13g5065	1081	ProSiteProfiles	C2 NT-type domain profile.	113	267	IPR019448	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g5065	Amo-Chr13	150057549	150062888	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g5065	830	1081	Calmodulin-binding Proteins	AT5G20720	76.772	1.11e-128	390

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g5065	-		-	gmx:100785837	1110.52