Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5064 ATGGATATCGAGGAAGACATCCGTTCTTTGCAGCTTGACTCAGCAGAAGACAATAATGGGGTGGTAATTCCAGATGATGTAAAGCCAGAAGAAGTTGATAAATCTGAAAAGATTGAAGAAATTGAGAAATCTAATGAGATGGATGAAGATCCAAAGCAGGAGGTTCAGGCACAGCCTAACCAGGCTGAGCCAACAGTGAGAAATAGAGAAATTCATCCTGTACAAGATCAAGAAGATGAGCTTGACAACCGAAAAAGGCACTTGAATGTTGTATTCATTGGCCATGTTGATGCTGGTAAGTCAACAACCGGAGGTCAGATACTTTTCCTCAGTGGTCAGGTTGATGAAAGGACTATACAGAAATATGAGAAAGAAGCTAAAGATAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGAGTGAAGGGAAAAACAGTTGAAGTTGGAAGAGCTCATTTTGAGACAGAGTCAACACGGTTTACAATTTTGGATGCACCTGGTCATAAAAGCTATGTTCCTAACATGATTAGTGGTGCATCTCAAGCTGATGTTGGAGTGTTGGTAATTTCTGCTCGAAAGGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTTGTTGTTGTAAATAAAATGGATGATCCAACTGTGAATTGGGCAAAAGAAAGGTATGATGAGATTGAGTCAAAGATGATTCCATTTTTGAGACAATCAGGATACAATGTGAAGAAAGATGTCATGTTTTTGCCAATATCTGGTCTGATTGGCACCAACTTGCAAACAAGAGTGGATAAAAGCATTTGCTCATGGTGGGATGGCCCTTGCTTATTTGAAGCGCTTGATGCTGTTGAAGTTCCTCTACGAGATCCCAATGGTCCTTTCAGGATGCCTATACTTGATAAATTCAAAGACATGGGAACTGTCGTTATGGGGAAAGTGGAATTTGGCAGTGTCCGTGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTTAAAGTTGTTGCTGTATTCATTGATGAAAATCGGGTTAGGCGTGCAGGACCTGGTGAAAATTTACGGATTAGGTTATCAGGTGTTGAAGAGGAGGATATATTATCTGGGTTTGTCCTGTCTAGTGTTGCAAATCCAGTGCCAACTGTTACTGAGTTTGTTGCTCAGCTGCAAATCCTTGAATTGCTGGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTATTGCATATACACTCTGTTGTTGAAGAATGTGAAATTGTTGAGCTGTTACAGCAAATAGATCCAAAGACAAAGAAACCAATGAAAAAGAAAGTGCTATTTGTGAAGAATGGTGCTGTTGTTGTGTGCCGTGTTCAGGTTAGTAACACGATATGTGTTGAGAAGTTTTCTGATTTTCCGCAACTAGGGAGATTCACTCTTCGCAGTGAAGGAAAAACTGTTGCGGTTGGGAAAGTCACTGGTGTGTGA 1536 0.4082 MDIEEDIRSLQLDSAEDNNGVVIPDDVKPEEVDKSEKIEEIEKSNEMDEDPKQEVQAQPNQAEPTVRNREIHPVQDQEDELDNRKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADVGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWAKERYDEIESKMIPFLRQSGYNVKKDVMFLPISGLIGTNLQTRVDKSICSWWDGPCLFEALDAVEVPLRDPNGPFRMPILDKFKDMGTVVMGKVEFGSVREGDSLLVMPNKDQVKVVAVFIDENRVRRAGPGENLRIRLSGVEEEDILSGFVLSSVANPVPTVTEFVAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTKKPMKKKVLFVKNGAVVVCRVQVSNTICVEKFSDFPQLGRFTLRSEGKTVAVGKVTGV* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5064 511 Gene3D Translation factors 314 399 - -
Amo13g5064 511 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 85 310 IPR000795 GO:0003924|GO:0005525
Amo13g5064 511 PANTHER TRANSLATION FACTOR 79 505 - -
Amo13g5064 511 PANTHER BNAA06G12300D PROTEIN 79 505 - -
Amo13g5064 511 CDD eRF3_C_III 403 509 - -
Amo13g5064 511 Pfam Elongation factor Tu C-terminal domain 402 511 IPR004160 -
Amo13g5064 511 MobiDBLite consensus disorder prediction 23 53 - -
Amo13g5064 511 Pfam Elongation factor Tu GTP binding domain 85 291 IPR000795 GO:0003924|GO:0005525
Amo13g5064 511 SUPERFAMILY Translation proteins 308 401 IPR009000 -
Amo13g5064 511 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 405 510 IPR009001 -
Amo13g5064 511 CDD EF1_alpha 89 309 - -
Amo13g5064 511 Gene3D - 67 309 IPR027417 -
Amo13g5064 511 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 141 156 IPR031157 -
Amo13g5064 511 CDD eRF3_II 316 397 - -
Amo13g5064 511 MobiDBLite consensus disorder prediction 1 71 - -
Amo13g5064 511 Gene3D Translation factors 404 511 - -
Amo13g5064 511 PRINTS GTP-binding elongation factor signature 89 102 IPR000795 GO:0003924|GO:0005525
Amo13g5064 511 PRINTS GTP-binding elongation factor signature 168 178 IPR000795 GO:0003924|GO:0005525
Amo13g5064 511 PRINTS GTP-binding elongation factor signature 184 195 IPR000795 GO:0003924|GO:0005525
Amo13g5064 511 PRINTS GTP-binding elongation factor signature 228 237 IPR000795 GO:0003924|GO:0005525
Amo13g5064 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 320 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5064 Amo-Chr13 150043567 150052481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5064 81 511 Eukaryotic Initiation Factors Gene Family AT5G60390 37.097 4.41e-95 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5064 K03267 - gmx:100784412 853.588