Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5063 ATGCGGCTTTTTTATATATTTAAATATAGAAAAAACTTTAATTCCCGGAATACGCACCAAATCAAAACGTTTCTGAAATACGCAGGGCCATCTCATGGGCGTCGTCCGCAAAATGGAGAAGCACGTCAACTCACTCCCGGCGGCCGCGAATTGGAGCTGACACGGGCAGCTTTCCCATTTCGTGCATGGCAGGAACAAAATGACCCATTCCACCCCCGGCGCACACGACTTGGACCATATCAAGACCTGCGCCAGCGAAATGGGGCAATTAGCTTGCGGTGGACACGAAATGGAGACTTGCTTTTGGGATTCAACACTTTCTTGCCAAGGGGTTATGAAATCACACTTCCACTGGAGGATGAACAACCTGCCCCAAAGAAGCCTATTGAATTTGAAGAAGTGATTAATTTTGTGAACAAAATTAAGGTAAAATGTGATGATCGTGTTTACAAGTCATTTCTGGACATATTAAATATGTATAGAAAGGAAAGCAAGTCTATAGCAGAGGTCTACCAGGAGGTTGCTGCACTTTTCCAAGAGCATCCGGATCTTCTTGATGAGTTTACTCATTTTCTCTCGGACACTTCCTCAGCAGCCTCTGCTCATTATATTTCTGCTAGAAATTCTATGCTACGTGATAGGAGCTCTGCAATGCCAACTGTATGGCAAATGCATGTTGAGAAGGTTTATCTCGGTATTTTTCTGTCTCCGAGATGCTAA 720 0.4403 MRLFYIFKYRKNFNSRNTHQIKTFLKYAGPSHGRRPQNGEARQLTPGGRELELTRAAFPFRAWQEQNDPFHPRRTRLGPYQDLRQRNGAISLRWTRNGDLLLGFNTFLPRGYEITLPLEDEQPAPKKPIEFEEVINFVNKIKVKCDDRVYKSFLDILNMYRKESKSIAEVYQEVAALFQEHPDLLDEFTHFLSDTSSAASAHYISARNSMLRDRSSAMPTVWQMHVEKVYLGIFLSPRC* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5063 239 ProSiteProfiles PAH domain profile. 127 195 IPR003822 GO:0006355
Amo13g5063 239 PANTHER SIN3B-RELATED 99 225 IPR039774 GO:0003714
Amo13g5063 239 Pfam Paired amphipathic helix repeat 149 192 IPR003822 GO:0006355
Amo13g5063 239 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 99 225 - -
Amo13g5063 239 SUPERFAMILY PAH2 domain 125 194 IPR036600 GO:0006355
Amo13g5063 239 Gene3D Paired amphipathic helix 126 196 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5063 Amo-Chr13 150022924 150023879 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo13g5063 PAH 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5063 K11644 - aip:110271441 334.339