Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5034 ATGGAGATTCACTACAGTAGCAGTTACTTCGAAAGGCGCCCCATAATCAGGTCCAAGGCGCCAGCTGCTAAATGGGTTAAAGAATGGGTTCCCCAAGATGTTGTAGCCACTGGGGGGAAATGCATGCTCTTAAGATGGGTTAGAGAGGATGCCTTGAAGGCATTGCAGGAAAAGGAAAAAGAACCGGCTGTACCTGAACCGGAACCAGAGCCAACTACTGAAGTGCTTTTTCTTTGCAGCTATGAAGGATGTGGAAAGACGTTCATTGATGCCGGTGCATTGAGGAAACATTCTCACATTCATGGAGAGAGACAATTTGTTTGTCACTATGAGGGGTGCGGAAAGAAATTTCTTGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCACACAGGGGAGAGGGATTTTGTGTGTCCCCATGAAGGCTGTGGTAAGGCCTTCTCTCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATCTGTCCGTACTCAGAATGCGGAAAGAGATATGCTCACGAATACAAGCTAAAGAATCACATTGCCTCTCACCATGAAAAGAATGCAGCACTGGAGGTGCCGATGTATACTCCGCCTTTAGAGAGACAACCAAAAACTACTAAACATTCTGGCACAGCATATGGTTCTGCATCGTCAGATCGCCCCTATGCATGCCCTTATGAAGGATGTGAAAAAGCCTACATTCATGAATACAAGCTTAAACTCCATTTGAAGAGGGAACATCCTGGGCATATGTCTGATGAAAATGCAGAGCATGCTCAAGCTAATCTTGATAATGAAATGGATGAAGCAAGCGATCAAGATGCCTATGGTGGCAAACGGTCAAATGGTAAAATTCAGAAGCAAAGTAAGCTAAAACCAAACCTTAAGTTGCCTCCTTCCAAAATCGCCAAACGCAAAGCACCGCCACCTACTCCTGCCACCATAGCCGTAACAAAGAAACCTTGGTCTGTGAATGTGAGAGAGGAGGCTTACAACGAAGAAGACAGCGAAGAAACAGAAGAGGAGGATCGCGACAATGTTGAAGATGGTTGGAGATATGCTGGCAACAATGACGACGATGATGAAGAAACAGAATATGAAGACTGA 1128 0.4433 MEIHYSSSYFERRPIIRSKAPAAKWVKEWVPQDVVATGGKCMLLRWVREDALKALQEKEKEPAVPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYSECGKRYAHEYKLKNHIASHHEKNAALEVPMYTPPLERQPKTTKHSGTAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAEHAQANLDNEMDEASDQDAYGGKRSNGKIQKQSKLKPNLKLPPSKIAKRKAPPPTPATIAVTKKPWSVNVREEAYNEEDSEETEEEDRDNVEDGWRYAGNNDDDDEETEYED* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5034 375 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Amo13g5034 375 MobiDBLite consensus disorder prediction 338 352 - -
Amo13g5034 375 SMART c2h2final6 136 160 IPR013087 -
Amo13g5034 375 SMART c2h2final6 166 190 IPR013087 -
Amo13g5034 375 SMART c2h2final6 77 101 IPR013087 -
Amo13g5034 375 SMART c2h2final6 229 254 IPR013087 -
Amo13g5034 375 SMART c2h2final6 106 130 IPR013087 -
Amo13g5034 375 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Amo13g5034 375 Gene3D Classic Zinc Finger 162 191 - -
Amo13g5034 375 Coils Coil 260 280 - -
Amo13g5034 375 Gene3D Classic Zinc Finger 206 271 - -
Amo13g5034 375 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 374 - -
Amo13g5034 375 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Amo13g5034 375 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Amo13g5034 375 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Amo13g5034 375 PANTHER BNAA03G13270D PROTEIN 4 374 - -
Amo13g5034 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Amo13g5034 375 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Amo13g5034 375 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Amo13g5034 375 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Amo13g5034 375 Gene3D Classic Zinc Finger 77 102 - -
Amo13g5034 375 Gene3D Classic Zinc Finger 134 161 - -
Amo13g5034 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Amo13g5034 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Amo13g5034 375 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Amo13g5034 375 Gene3D Classic Zinc Finger 103 133 - -
Amo13g5034 375 MobiDBLite consensus disorder prediction 206 226 - -
Amo13g5034 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
Amo13g5034 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Amo13g5034 375 MobiDBLite consensus disorder prediction 209 223 - -
Amo13g5034 375 MobiDBLite consensus disorder prediction 274 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5034 Amo-Chr13 149639892 149642424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5034 10 361 C2H2 Transcription Factor Family AT4G06634 65.027 5.28e-150 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g5034 zf-C2H2 0.00038 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5034 - - zju:107403391 588.186