Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5029 ATGCATGGCGAGGAGGGTGAGGGAGGAAACTGGACAAGGAAGAAGAGAGGACTGAGCAAACAGGAGGAGCGGTGGAAAAGATTGAGGCGTCGGCTGGCGATGTTTTGCGGTGAGGCCGAAGATAATTCCACCGCTCACGGCGGAGATGTACGGCGGCAATATATTATTCACCCTGACAATCGGTTGTACAATATTGGGTGGAAGCATTTCATACTGATATGGGCGGTGTACTCCTCCTTCTTCACCCCAATGGAGTTCGGATTCTTCAGAGGCCTCCCGGAGAAAATATTCCTGCTAGACATCGCGGGCCAGTTGGCCTTCCTCKTKGACATCGTGCTCCGCTTCTTCGTGGCCTACCGCGACACCCACTCCTACTGCGTGGTCTCCAGCCCCTCCCGCATCGCCATCCGCTGCCTCAAGTCTCCGCAATTCACCCTCGACCTCCTCGGCTGCCTCCCCTGGGACTACATCTACAAGGCAGCCGGCAGGAAGGAGCCGCTCCGCTATCTCCTCTGGATCAGGCTGACCCGGGCCGCCCGCGTCACGGAGTTATTCGAGACGCTGGAGAAGGACATCCGGATCAACTACCTCTTCACGAGAATCGTGAAGCTTCTKGTGGTGGAGCTCTACTGCACCCACACAGCCGCCTGCATCTTCTACTATCTGGCCACCACCATCCCRCCCTCCCGCGAGTCCTACACTTGGATTGGCTCCCTCAAGATGGGCGACTTTGCCTACTCGGACTTCCGCCACATCGACCTCTGGAAGCGCTACATCACCTCCCTCTATTTTGCTATTGTCACCATGGCCACTGTTGGCTACGGCGATATTCATGCCGTCAATGTCAGAGAGATGATATTCATCATGGTTTATGTCTCCTTTGACATGATTCTTGGCGCTTACCTTCTTGGCAACATGACCGCCTTGATTGTCAAGGGATCCAAAACCGAGAGGTTTAGGGACACCATGACTGAAGTTATCAAATACATGAATAAAAACAATCTTGACAAGCCCACAAGTAAGGCCATCAAGGGCCATTTGCGCTTGCAGTATCATCGCAGCTACACACAACCTGCTGTACTTCAGGACATCCCACCCTTTATTCGATCCAAGATTTCAATTAATTTGTATGAGGAGTTCATTGAGAACGTTCCTCTTTTCAAGGGTTGCTCCTCAGAGTTTGTTAAGCAGATTACAACCAAAGTTCATGAAGAGTTTTTCCTCCCTGGAGAACTGGTTTTGGAGCAAGGAGATGTAGCAGATCAAATTTACTTCGTATGTCATGGAGAGCTGCGTGAGATAAGCAGTGAAAATGATAGTGGTACAGACGAAGTGGTCCAATTAAAAACCTACGATTCCTTCGGTGAGGTTTCTTTCCTTTGCAATATGCCTCATCATTCCACAGTCATAGCTCATGAGCTTTCCAAGGTTTTGCGACTTGATAAGCAATCCTTGAAGGACATAGTGAAGATATACTATGTAGATGGCCGTGTTACCTTAAACAATCTCCTTGAGGGAAAAGACTCCGGTCTAAAACGCAAGTTGTTGGAATCAGACTTGAGCTTGACTATTGGAAACCAGGAAACAGAGTTGACTGTGAGGATGAATTGTGCTGCATATGAGGCTGACTTATACCTTTTGAAACGTTTGATCACCTCCGGGGCAGATCCCAATAACACTGATTATGATGGTAGATCACCCTTGCATATCTCTGCCTCAAAAGGATATGTAGATATTTCTTCCTTTCTAGTTGAGCAAGGAGTAAATATCAATTTACCAGATAAATCTGGGGCTACTCCCTTGCTAGAAGCCATCAAGAATGGACATGAAGACGTAGCTGCTTTACTAGTTAATGCAGGGGCTACTCTCACTATTGATGATGCCGGAAATTTTCTCTGTGTGATGGTTGCAAAGAAGGAATTTGACCTCTTAAAAAAGGTTCTGGCTTGTGGAATTAATCCAAATGCCAAAAATTATGACCAGCGCACACCTCTTCACATTGCTGCTTCTGAAGGTTTGTGTGCAGTAGCTGAACTACTTCTGGGAGCAGGAGCAAGTGTATTATGRAAGGACAGATGGGGGAATACACCACTTGATGAAGCTCGTATRYGCGGAGATATAAKTGCTCTCAAAATGCTTCAAGTTGCCAAASTTTCTCAGTTGGCTGAGTTATCCTGTGGTATTCAAGAAACTAAAGAAATATTGCCATCAAGAAATGAAATTCCGAAGAAGAGATGTATAGTATTTCCTTTCCACCCATGGGAATATGATCATAAAGAAAYGAGAACAGATGGAGTTGTTCTATGGGTCCCGGAAAGCATTGACGAGCTTATAATAACGGCAATGAAACATTTGAACATTTCAAATGGSAKTTGTATTTTAACAGAACAAGGAGGCAGAGTTCTAAATGTAGACATAATTAGCAATGATGAGAAGCTATTTCTGGCGAGCCAAGTGCAGAGTGCAGAGTGA 2472 0.4632 MHGEEGEGGNWTRKKRGLSKQEERWKRLRRRLAMFCGEAEDNSTAHGGDVRRQYIIHPDNRLYNIGWKHFILIWAVYSSFFTPMEFGFFRGLPEKIFLLDIAGQLAFLXDIVLRFFVAYRDTHSYCVVSSPSRIAIRCLKSPQFTLDLLGCLPWDYIYKAAGRKEPLRYLLWIRLTRAARVTELFETLEKDIRINYLFTRIVKLLVVELYCTHTAACIFYYLATTIPPSRESYTWIGSLKMGDFAYSDFRHIDLWKRYITSLYFAIVTMATVGYGDIHAVNVREMIFIMVYVSFDMILGAYLLGNMTALIVKGSKTERFRDTMTEVIKYMNKNNLDKPTSKAIKGHLRLQYHRSYTQPAVLQDIPPFIRSKISINLYEEFIENVPLFKGCSSEFVKQITTKVHEEFFLPGELVLEQGDVADQIYFVCHGELREISSENDSGTDEVVQLKTYDSFGEVSFLCNMPHHSTVIAHELSKVLRLDKQSLKDIVKIYYVDGRVTLNNLLEGKDSGLKRKLLESDLSLTIGNQETELTVRMNCAAYEADLYLLKRLITSGADPNNTDYDGRSPLHISASKGYVDISSFLVEQGVNINLPDKSGATPLLEAIKNGHEDVAALLVNAGATLTIDDAGNFLCVMVAKKEFDLLKKVLACGINPNAKNYDQRTPLHIAASEGLCAVAELLLGAGASVLXKDRWGNTPLDEARXXGDIXALKMLQVAKXSQLAELSCGIQETKEILPSRNEIPKKRCIVFPFHPWEYDHKEXRTDGVVLWVPESIDELIITAMKHLNISNGXCILTEQGGRVLNVDIISNDEKLFLASQVQSAE* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5029 823 ProSiteProfiles Ankyrin repeat region circular profile. 596 627 - -
Amo13g5029 823 SUPERFAMILY cAMP-binding domain-like 314 503 IPR018490 -
Amo13g5029 823 Gene3D Jelly Rolls 357 509 IPR014710 -
Amo13g5029 823 Pfam Ankyrin repeats (3 copies) 538 626 IPR002110 GO:0005515
Amo13g5029 823 SMART cnmp_10 386 504 IPR000595 -
Amo13g5029 823 ProSiteProfiles Ankyrin repeat profile. 660 692 IPR002110 GO:0005515
Amo13g5029 823 Gene3D - 517 635 IPR036770 -
Amo13g5029 823 SUPERFAMILY Ankyrin repeat 535 713 IPR036770 -
Amo13g5029 823 SUPERFAMILY Voltage-gated potassium channels 67 311 - -
Amo13g5029 823 Pfam KHA, dimerisation domain of potassium ion channel 744 815 IPR021789 -
Amo13g5029 823 Gene3D - 636 716 IPR036770 -
Amo13g5029 823 ProSiteProfiles KHA domain profile. 745 823 IPR021789 -
Amo13g5029 823 Pfam Ankyrin repeats (many copies) 648 701 IPR002110 GO:0005515
Amo13g5029 823 ProSiteProfiles cAMP/cGMP binding motif profile. 386 489 IPR000595 -
Amo13g5029 823 CDD CAP_ED 386 492 IPR000595 -
Amo13g5029 823 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG, ANKYRIN REPEAT-CONTAINING DOMAIN PROTEIN-RELATED 44 818 - -
Amo13g5029 823 ProSiteProfiles Ankyrin repeat profile. 596 628 IPR002110 GO:0005515
Amo13g5029 823 PRINTS EAG/ELK/ERG potassium channel family signature 302 311 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo13g5029 823 PRINTS EAG/ELK/ERG potassium channel family signature 210 220 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo13g5029 823 PRINTS EAG/ELK/ERG potassium channel family signature 100 110 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo13g5029 823 PRINTS EAG/ELK/ERG potassium channel family signature 258 275 IPR003938 GO:0005249|GO:0006813|GO:0016020
Amo13g5029 823 ProSiteProfiles Ankyrin repeat region circular profile. 660 692 - -
Amo13g5029 823 PANTHER POTASSIUM CHANNEL AKT1 44 818 IPR045319 GO:0005249|GO:0006813
Amo13g5029 823 Pfam Cyclic nucleotide-binding domain 406 490 IPR000595 -
Amo13g5029 823 Gene3D - 67 312 - -
Amo13g5029 823 ProSiteProfiles Ankyrin repeat profile. 563 595 IPR002110 GO:0005515
Amo13g5029 823 Pfam Ion transport protein 67 311 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo13g5029 823 ProSiteProfiles Ankyrin repeat region circular profile. 563 595 - -
Amo13g5029 823 SMART ANK_2a 660 689 IPR002110 GO:0005515
Amo13g5029 823 SMART ANK_2a 563 592 IPR002110 GO:0005515
Amo13g5029 823 SMART ANK_2a 530 559 IPR002110 GO:0005515
Amo13g5029 823 SMART ANK_2a 693 722 IPR002110 GO:0005515
Amo13g5029 823 SMART ANK_2a 596 625 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5029 Amo-Chr13 149579764 149587305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5029 2 692 Ion Channels AT5G37500 56.162 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5029 K21867 - gmx:100798698 1076.23