Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5027 ATGGTGGCACTGGCCAATGCCATTGTGGCCACGGTGCTGGTGCTGGTGCTTGTGGTGGTGTTTCCACTCGGAAAGGCAGATCTGGCATCGGAGCGGGCGGCATTGCTGGCTCTACGGTCCTCCGTCGGCGGCAGAACCCTCTTCTGGAACGCGACCAACCAGAGCCCCTGCAACTGGGCTGGCGTGCAATGCGAGCAGGGTCAGGTGGTGGAGCTCCACCTGCCCGCCGTGGCACTCTCCGGGCGCATTCCGGRGGGAATATTCGGGAACCTGACACACCTRCGCACCCTGAGCCTGCGGTTCAACGCGCTGACGGGACCCCTCCCCGCAGATCTGGCATCGTGCATCAACCTCCGGAACCTGTACCTGCAGCGCAATCTGCTTTCCGGCGAAATCCCAGAGTTGCTGTTCCGGCTGCCGGACCTGGTCCGCCTGAACCTTGGCTTCAACAATTTCTCGGGTGGGGTCCCCGCAGAGTTCAACAAGTTGAGCAGACTTAGAACTCTTTACCTCCAAAACAATCAGCTCTCCGGTCCCATCCCGCAGCTCAGCCTGCCGGACCTCGAGCAGTTCAACGTCTCCAACAACTTCCTCAATGGCTCTGTCCCCGACAAGCTCCAGAAATTCCCCCAAGATTCCTTTCTTGGCAATTCCCTCTGCGGCCGCCCGCTCAAGCTCTGCCCCGGCGACGATGCATCTGCATCTTCTCCTTCCGGCGACATTCCCAATAACAAGACCAAGAAGAAGAACAAGTTATCTGGCGGTGCCATTGCTGGAATTGTCATCGGATCCGTCGTGTGTCTTCTGCTGCTCGTATTCGCACTGATTCTTTTGTGTAGGAAGAAGAGTTCCAAGAAGACCAGTGCCGTTGAAGTTGCAACCGTCAAGCATCCGGAGCCCGAACTTCCAGGCGACAAACCAGTGGACGAGTTGGAGAACGGGCCGGGGCCCCACAGTAATGGCGCTCACGAAAATGGGTCTACGGTGGCTGCAGCAGCTGCAGCGGCTATGGCGGCAGGGAATGGAAACAAGGCCGAGGCCAACGGCGGCGGTGGTAGTGGAGCCAAGAAGTTGGTGTTTTTTGGTAATTCTGCAACAGCGGGGGCGGCGAGGCCATTTGATCTGGAGGATTTGCTTCGGGCTTCGGCGGAGGTATTGGGGAAAGGTACGTTTGGTACGGCGTACAAGGCGGTTTTGGAGMCAGGGCCGGTGGTGGCTGTGAAGAGGTTGAAGGATGTGACGATTTCCGAGAAGGAGTTCAAGGAGAAGATCGAGTCTGTGGGAGCAATGGATCATGAGAACTTGGTTCCTCTGAGGGCTTATTATTTCAGCAGAGATGAGAAGCTTCTTGTWTATGATTACATGCCCATCGGAAGCTTATCTGCTCTTTTGCATGGAAACAAAGGAGCGGGGAGGACACCGTTAAACTGGGAAATCAGGTCAGGCATTGCACTTGGAGCTGCACGCGGGATTGAATACCTTCACTCACAGGGAACCAATGTTTCTCATGGAAACATTAAGTCCTCTAATATCCTCTTAACCAAGTCCTACGATGGTAGAGTATCTGACTTCGGCCTCGCCCACCTTGTTGGCCCCTCCTCCACCCCTAACCGAGTGGCCGGCTATCGCGCCCCTGAGGTCACTGATCCTCGCAAAGTATCCCAGAAGGCAGATGTGTACAGCTTTGGCGTGCTGCTCTTGGAGCTACTGACCGGGAAAGCACCCACCCATGCTATCCTAAACGAGGAAGGAGTGGACCTCCCTAGATGGGTCCAATCCGTTGTCCGAGAAGAGTGGACTTCGGAGGTGTTTGATCTTGAGCTGCTGAGGTACCAGAATGTTGAAGAGGAGATGGTTCAGCTGTTGCAGCTRGCAGTTGATTGCGCAGCACCCTACCCMGATAAGCGCCCTTCCATGTCTCAAGTGGTACAGAGCATTGAAGAATTGCGTCGCTCCAGCTTGAAAGAGGATCAGGACCAAATCCAAACCCAACATGATCTTGTAGAGTTATAG 2013 0.5534 MVALANAIVATVLVLVLVVVFPLGKADLASERAALLALRSSVGGRTLFWNATNQSPCNWAGVQCEQGQVVELHLPAVALSGRIPXGIFGNLTHLRTLSLRFNALTGPLPADLASCINLRNLYLQRNLLSGEIPELLFRLPDLVRLNLGFNNFSGGVPAEFNKLSRLRTLYLQNNQLSGPIPQLSLPDLEQFNVSNNFLNGSVPDKLQKFPQDSFLGNSLCGRPLKLCPGDDASASSPSGDIPNNKTKKKNKLSGGAIAGIVIGSVVCLLLLVFALILLCRKKSSKKTSAVEVATVKHPEPELPGDKPVDELENGPGPHSNGAHENGSTVAAAAAAAMAAGNGNKAEANGGGGSGAKKLVFFGNSATAGAARPFDLEDLLRASAEVLGKGTFGTAYKAVLEXGPVVAVKRLKDVTISEKEFKEKIESVGAMDHENLVPLRAYYFSRDEKLLVYDYMPIGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGTNVSHGNIKSSNILLTKSYDGRVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHAILNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAPYPDKRPSMSQVVQSIEELRRSSLKEDQDQIQTQHDLVEL* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5027 670 MobiDBLite consensus disorder prediction 298 312 - -
Amo13g5027 670 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Amo13g5027 670 Gene3D Ribonuclease Inhibitor 30 138 IPR032675 -
Amo13g5027 670 Gene3D Phosphorylase Kinase; domain 1 363 454 - -
Amo13g5027 670 Pfam Leucine rich repeat N-terminal domain 29 64 IPR013210 -
Amo13g5027 670 CDD STKc_IRAK 386 649 - -
Amo13g5027 670 Gene3D Transferase(Phosphotransferase) domain 1 455 669 - -
Amo13g5027 670 SUPERFAMILY Protein kinase-like (PK-like) 384 647 IPR011009 -
Amo13g5027 670 MobiDBLite consensus disorder prediction 295 327 - -
Amo13g5027 670 Pfam Protein kinase domain 383 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5027 670 ProSiteProfiles Protein kinase domain profile. 380 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5027 670 SUPERFAMILY L domain-like 47 209 - -
Amo13g5027 670 Gene3D Ribonuclease Inhibitor 141 227 IPR032675 -
Amo13g5027 670 PANTHER OS05G0588300 PROTEIN 5 668 - -
Amo13g5027 670 ProSitePatterns Protein kinases ATP-binding region signature. 386 408 IPR017441 GO:0005524
Amo13g5027 670 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 5 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5027 Amo-Chr13 149555611 149558362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5027 27 650 Receptor kinase-like Gene Family AT1G48480 64.780 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo13g5027 Pkinase 8.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5027 - - gmx:100818955 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5027 13 149555611 149558362 Amo05g4289 05 112628109 112631020 PCT
Amo05g4289 05 112628109 112631020 Amo13g5027 13 149555611 149558362 PCT