LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g5013	ATGGCTGCTGATTCCTCTTCTGCCAATGCTTTCCTTGAAGAACTAGAGGCCCTCAGTGACTCCCTCTACAAATCACACACAACTCGAAGAACAGCTTCCCTTGTCCTGCCACGAACTTCATCTCCTTCTGTTCCATCTGCCCAAGAAGAAGATGTCAAAGTCAATGCAAAACCTCGATCACGCCGCCTGTCCTTGTCCCCATGGCGATCAAGGCCGAAGCTTGAAGATGCCAAGGCACCACCAACTACTCAGTCACCGGGAGAAACCAGAAAGCTAGATGAGTCGTCCGGTGACGGTGACAAGAAAGGGATTTGGAGCTGGAAGCCTATCCGGGCTTTGTCTCATATTGGAATGCAGAAACTAAGCTGTTTATTCTCCGTTGAAGTGGTTGCAGCACAAGGCCTTCCTTCTTCCATGAATGGCCTTAGGCTCTCTGTGTGTGTTAGAAAGAAAGAGACAAAGGACGGTGCTGTTAAGACCATGCCATCACGTGTTACACAAGGAGCTGCAGATTTCGAAGAGACTCTTTTCATCAGGTGCCATGTTTATGCCACCCAAGCTGGTGGAGCTGCAAAGCAGGTTAAGTTTGAGCCACGCCCCTTTTTGATATACCTTTTCGCAGTTGATGCTAAAGAGCTTGATTTTGGAAGAAGCTCGGTGGATTTGAGCGAGCTCATCAAAGAATCCATTGAGAAAAACCATGAAGGAACACGAGTTCGCCAATGGGACACAAGCTTCAGCTTGTCTGGAAAGGCAAAGGGAGGAGAACTTGTTCTCAAACTGGGATTCCAGATCATGCAGAAAGATGGTGGACTCGATATATATAATCAACTCGAGAATCCAAATTCAAATTCAAATTCCAAGACCAGCTCCAGCTCCAGCAAGTTGAGAAATTTCTCATCTTTTGCTCGCAAACAATCCAAGACGTCCTTCAGCATGCCTAGTCCCAGAATGACAAGCAAAAATGATGCACGAAGGCAGGCAGATATTCAAGGAATGGATGATTTGAATCTTGATGACCCAAACCCGAAACCTGAAAAGGTGGAGGATTTCGATCTTCCTGATTTCGAGGTTGTTGACAAAGGTGTTGAGGTTCAAGAGAAGGAAGAAGATGGAGGGGAATCTGAGAAACCTTTACCAGTCAAATCAACTCCTCCAGGTGAAGTTGTCAAGGAAATAGTCCATGATCATCTGCATCTCACTAGATTGAGTGAGCTTGATTCAATTGCCCAGCAGATAAAAGCTCTTGAGTCGATGATGGGAGAAGATGATAAGTATATGAAATTAGAGGACGAGACACAATCGCAAAGGCTAGATGCAGACGAAGAAACTGTGACGATGGAGTTTCTTCAGCTGCTTGAGGATCAAGACTTCAAAGGATACTCATTCAATCAACCTGAAATTCCACCATTACAACTTGAAGGACAGAAGGAATCTTCTTCTGCAGATGCTGAATCCAAGGTGTATCTGCCTGACCTTGGAAAGGGTTTGGGCTGTGTAGTTCAAACCAGAGATGGAGGCTACTTAGCTTCCATGAATCCATTAGATATGGCTGTGGAGAGGAAAGATACCCCAAAGCTAGCAATGCAGATGTCAAAGCCCTTTGTGTTGGAATCACATCAAAGCGTGACTGGCTTTGAGTTGTTTCAAAAACTGGCTGGTATTGGTCTTGATGAACTCAGCTCTCAAATTTTGTCATTGATGCCCATAGATGAACTTAGGGGCAAAACTGCAGAACAGGTGGCTTTTGAAGGCATTGCTTCTGCCATCATACATGGCAGGAGCAAGGAAGGAGCCAGTTCAAGCGCCGCTCGCATAGTTTCTTCCGTGAAAAGTATGGCAAATGCTATGAGCTCAGGAAGAAAAGAACGAATTTCGAGTGGCATTTGGAATGTGGATGAAGATCCGGTCAGTGCAGAGAAACTTCTGGCTTTTGCAATGCAGAAGATTGAATCAATGGCAGTGGAAGCATTGAAAATTCAAGCAGAAATGGCTGAGGAAGAAGCTCCGTTTGAAGTTTCTGCACTCAGCTCAAAGAAAGGGGACATTGAGAGTGGGAAAGAGATTTTGGCTTCTGCTTCTTCACTTGAGGATTGGATCAAAGATAATGCAAGTTCTGAGAGTGAAGCAGAAAAGGCCACACTGATGTTGGTTGTCCAATTGAGGGATCCGCTGAGACGCTATGAAGCAGTTGGAGGGCCTATCATGCATGTGGGAGGCTTCAAGGTGAGGAGTGGCACAAAAAAGAATTCATGGGACAGTGAGAGACAGAGGCTAACTGCAATGCAATGGTTGGTCTCATATGGCTTTGGAAAGGCAGCAAAGAAAGGGAAGCAAGCATTGCAAAAGGGGCAAGACCTGTTACGGACTATTTCCTCCCGAATTGTGGCTGACATGTGGCTTAAAACCATGAGAAATCCAGATATCATGCTTCTAAAGGATCCAGCTTGTGTTGTGAAAACGGGGCGGATTTTCCAACCGGGTGCCTTTGCAATGGCGACAGCTCAGCTAACAGCATCCTCAATTTCCTCGAGGAACGTGTCGTCGTTCGAAGGGCTTCGACCTTCGGCAGTTCAGTTCCCCTCCGTCGTCAGAATTGGAACCCTCACTCAAAGGTCCTTCCGGGGTTTGGTTGTGAAAGCCGCAACTGTTGTTGCTCCAAAGTACACTGCTATTAGGCCTCTTGGCGACAGAGTACTGGTTAAAATTAAGGAAGCAGAAGAGAAGACGGACGGAGGAATTCTACTTCCTTCAACTGCTCAAACAAAGCCACAGGGTGGTGAAGTTGTTGCTGTTGGAGAGGGGAAATCTGTTGGGAAGAGCAAAATAGAGATTAGTGTGCAGACTGGTGCACAAGTTGTGTATTCGAAGTATGCTGGTACTGAGGTGGAGTTCAATGGGGCAAAGCATCTTATACTGAAGGACGATGACATTGTTGGTATCCTCGAGACCGAAGAGATCAAGGATCTTAAACCGTTGAATGATAGAGTCTTAATACAGGTTGCACAAGCAGAGGACAAAACTGCAGGTGGTTTGTTGCTTACCGAAGCAACCAAGGAGAAACCTTCGATCGGAACGGTGATTGCGGTGGGCCCAGGGCCTCTTGATGAGGAAGGTAACAGGAAACCGTTGTCTGTTAATCCTGGGAACACAGTGTTGTACTCCAAATATGCTGGGAACGACTTCAAGGGAAAAGATGGTTCGGACTACATTGCATTGAGGGTCTCAGATATCATGGCTGTCCTTTCCTAG	3252	0.4622	MAADSSSANAFLEELEALSDSLYKSHTTRRTASLVLPRTSSPSVPSAQEEDVKVNAKPRSRRLSLSPWRSRPKLEDAKAPPTTQSPGETRKLDESSGDGDKKGIWSWKPIRALSHIGMQKLSCLFSVEVVAAQGLPSSMNGLRLSVCVRKKETKDGAVKTMPSRVTQGAADFEETLFIRCHVYATQAGGAAKQVKFEPRPFLIYLFAVDAKELDFGRSSVDLSELIKESIEKNHEGTRVRQWDTSFSLSGKAKGGELVLKLGFQIMQKDGGLDIYNQLENPNSNSNSKTSSSSSKLRNFSSFARKQSKTSFSMPSPRMTSKNDARRQADIQGMDDLNLDDPNPKPEKVEDFDLPDFEVVDKGVEVQEKEEDGGESEKPLPVKSTPPGEVVKEIVHDHLHLTRLSELDSIAQQIKALESMMGEDDKYMKLEDETQSQRLDADEETVTMEFLQLLEDQDFKGYSFNQPEIPPLQLEGQKESSSADAESKVYLPDLGKGLGCVVQTRDGGYLASMNPLDMAVERKDTPKLAMQMSKPFVLESHQSVTGFELFQKLAGIGLDELSSQILSLMPIDELRGKTAEQVAFEGIASAIIHGRSKEGASSSAARIVSSVKSMANAMSSGRKERISSGIWNVDEDPVSAEKLLAFAMQKIESMAVEALKIQAEMAEEEAPFEVSALSSKKGDIESGKEILASASSLEDWIKDNASSESEAEKATLMLVVQLRDPLRRYEAVGGPIMHVGGFKVRSGTKKNSWDSERQRLTAMQWLVSYGFGKAAKKGKQALQKGQDLLRTISSRIVADMWLKTMRNPDIMLLKDPACVVKTGRIFQPGAFAMATAQLTASSISSRNVSSFEGLRPSAVQFPSVVRIGTLTQRSFRGLVVKAATVVAPKYTAIRPLGDRVLVKIKEAEEKTDGGILLPSTAQTKPQGGEVVAVGEGKSVGKSKIEISVQTGAQVVYSKYAGTEVEFNGAKHLILKDDDIVGILETEEIKDLKPLNDRVLIQVAQAEDKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKPLSVNPGNTVLYSKYAGNDFKGKDGSDYIALRVSDIMAVLS*	1084

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Amo13g5013	1083	MobiDBLite	consensus disorder prediction	29	100	-	-
Amo13g5013	1083	PANTHER	PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1	4	736	IPR039614	-
Amo13g5013	1083	SUPERFAMILY	GroES-like	890	983	IPR011032	-
Amo13g5013	1083	Gene3D	GroES chaperonin	885	984	IPR037124	GO:0006457
Amo13g5013	1083	Gene3D	GroES chaperonin	985	1083	IPR037124	GO:0006457
Amo13g5013	1083	ProSiteProfiles	C2 NT-type domain profile.	113	267	IPR019448	-
Amo13g5013	1083	MobiDBLite	consensus disorder prediction	29	48	-	-
Amo13g5013	1083	SMART	Cpn10_2	891	982	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5013	1083	SMART	Cpn10_2	989	1082	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5013	1083	MobiDBLite	consensus disorder prediction	276	321	-	-
Amo13g5013	1083	Pfam	N-terminal C2 in EEIG1 and EHBP1 proteins	118	266	IPR019448	-
Amo13g5013	1083	PRINTS	10kDa chaperonin signature	914	935	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5013	1083	PRINTS	10kDa chaperonin signature	969	982	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5013	1083	PRINTS	10kDa chaperonin signature	948	960	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5013	1083	PRINTS	10kDa chaperonin signature	892	907	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5013	1083	Pfam	Chaperonin 10 Kd subunit	892	981	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5013	1083	Pfam	Chaperonin 10 Kd subunit	990	1081	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5013	1083	PANTHER	PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1	736	813	IPR039614	-
Amo13g5013	1083	ProSitePatterns	Chaperonins cpn10 signature.	892	916	IPR018369	GO:0005524\|GO:0006457
Amo13g5013	1083	MobiDBLite	consensus disorder prediction	276	386	-	-
Amo13g5013	1083	PANTHER	PLASTID MOVEMENT IMPAIRED PROTEIN	736	813	-	-
Amo13g5013	1083	PANTHER	PLASTID MOVEMENT IMPAIRED PROTEIN	4	736	-	-
Amo13g5013	1083	MobiDBLite	consensus disorder prediction	322	377	-	-
Amo13g5013	1083	ProSitePatterns	Chaperonins cpn10 signature.	990	1014	IPR018369	GO:0005524\|GO:0006457
Amo13g5013	1083	SUPERFAMILY	GroES-like	989	1082	IPR011032	-
Amo13g5013	1083	Hamap	Co-chaperonin GroES [groES].	891	983	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5013	1083	Hamap	Co-chaperonin GroES [groES].	989	1083	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5013	1083	CDD	cpn10	990	1082	IPR020818	GO:0005524\|GO:0006457\|GO:0140662
Amo13g5013	1083	CDD	cpn10	892	982	IPR020818	GO:0005524\|GO:0006457\|GO:0140662

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g5013	Amo-Chr13	149340042	149346133	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g5013	832	1083	Calmodulin-binding Proteins	AT5G20720	76.772	1.68e-128	389

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g5013	-		-	gmx:100785837	1110.9