Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5000 ATGGAGGCGCAACCTCCAACGCCACCACACACCGCACAGCCTCCGCCGTTGTCTTCGGTGGCGCCGCCGCCACAACAACCTCAGCAACCAGYGCCGCCACCGYCGTCACACCTGAACTACCCTGACTCGGTKGACTCGTCCCCRCGCTCTCGCAACACGGACTCATGGGACGAGCCCTTCCCGCCGGCGTCATCGAAGCTCCGGCTTATGTGCAGCTATGGCGGCCACATCGTTCCCCGGCCTCACGACAAGTCGCTCTGCTATGTMGGCGGCGACACKCGAATCGTGGTGGTTGAGCGAACAACTTCACTCGCGGACCTSTCCACGCGCCTCTCAAAGACGTTCCTGAATGGAAGACCGTTCAGCCTCAAGTACCAGCTCCCSAACGAAGACCTGGATTCTTTGATTTCTGTTACCACCGACGAGGACCTCGACAACATGATCGACGAGTATGACCGAACCAACAACAACCCTTCCGTGAAACCCTCGCGAATTCGGCTCTTYCTCTTCCCAACAAAGCCTGAATCGGTTCARAGTATTCCGCCCATTCTAGAAAGTTCCGCCAAGTCTGATGATTGGTTCCTCAACGCCCTAAACGGCTCTGGATTGCTCAACCGGGGTTTCTCTGACTCTGCCTCTGTGAATTGCCTTTTGGGTCTCGACGACGATGCTTCGGGGAATAATGTTGACCATAGCTCAAGGGACCCTGTCGAGGCTTCTTCTCAGCCTGGATCTTTTGGAAACGGCAAGAATMCGAAACAGGAGGTTCATTCTGTTCCCGATTCGCCYATGCTGGAGACTACTTCTTCGTTTGGCTCTACTTCTTCATCGCCGTCGCTGGCCAATTTGCCGCCGATTAGGGTTCATGTGGAAGATGGCAGCGGTGGCGGCGGGGTTAGGATGGTGCAGGATCACAAGGTTTTGGGAATTGAGGAGCAGTTTGCGCAGATGGGTGTGAGTGTTGCCGGTGGATTGGGGCAGAAGCAAGACGAGGGGCTGGTGGTGCTTTCTTCGCCTCCGCCTCCGCCTGTGCCGGTCACTCTATCTGCCGCTGGGGTGGGTGTGCCTGTTAGCTCAGCGCTGGTGGCTGGGGAGTACCAGAACAGGGTTTTCTCCGATGATGAGAGATCGGATCATGGCGTGCCTGTGGGTTACAGAAAACCACCGACACCTCAGCCACAGTTGCAGCAACAACCACAGCAACAACCACAGCTTCAGCCTCAGCCTCAGCCGCAGCAAACACAGTCACAGTCACAACCTCAACATCAACAGGTTTTACAGCCTCAATTTCAACCSAAGTCAACTGGCGTCGTTGATTTGCCTTCTCCAGATTCAGTTTCAAGTGATAGTAGTCTTTCAAATGCAATCTCTCGGCAAAAAGCTGTGATCTATCAAGACCAAGTTCAGATTCAGCCTGGGACTACAAGGGTTCCTAGTAACCCGGTTGATCCAAAACTAAACGTGTCCGATCCTCATGGTCGGATCCAGATGCAGCAGCTTGTACAGGACCCAGGATACTTGTTGCAACAGCAATTTGAACAACAGCCGCCGCMRCAGCAGCCTCAACAGCAACAACAGCAGCAGTTCATTCATGGTACTCATTTCATTCACCATGCTCCTCCTGGGGCCGTGCCGATWTCCGCCTACTATCCAGTATATCCTTCCCAGCAACAGTCCCACCMCCAGGTTTACTACGTTCCTGCGAGACAGCCCCCGGCTTACAACATGCCTGTTCAGCAGCCTAACATGGCTGAATCCGCCTCAARCATTCCTTCCAGCCGTCCCCAGACTCCRCCAAATCCCACCACATTGGTTCCACCTTCTGCAGCTTACAACCCCATGAGAAATGCTCCCATGCCCAAGACTGAAATGACGGCAGCTGCATACAGAGCTGTGAGTGCCGGTACCCCTCAATTGGTTCAAGTTCCTACCAGTCAGCATCAGCAACAGTATGTTGCTTACTCCCAGATTCAYCACCCTTCTCAGTCTATTGCTCAAAATTCTGCTCCCCCTCMTAATTATGCTTTTGATTATGCGGATCCGGCACATGCTCAGATATACTACTCTCAACCTCTGGCACCCTCAATGCCTTCTCAGTACCAGACCATGACAGCCGCTGCCATGGTAATGCCGGACGGTTCCACTCAGCAAYCCTCGGACAACATGAAGCAACAGATAAGAACTTCACAGCCATTATAA 2199 0.5321 MEAQPPTPPHTAQPPPLSSVAPPPQQPQQPXPPPXSHLNYPDSVDSSPRSRNTDSWDEPFPPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIVVVERTTSLADLSTRLSKTFLNGRPFSLKYQLPNEDLDSLISVTTDEDLDNMIDEYDRTNNNPSVKPSRIRLFLFPTKPESVQSIPPILESSAKSDDWFLNALNGSGLLNRGFSDSASVNCLLGLDDDASGNNVDHSSRDPVEASSQPGSFGNGKNXKQEVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVEDGSGGGGVRMVQDHKVLGIEEQFAQMGVSVAGGLGQKQDEGLVVLSSPPPPPVPVTLSAAGVGVPVSSALVAGEYQNRVFSDDERSDHGVPVGYRKPPTPQPQLQQQPQQQPQLQPQPQPQQTQSQSQPQHQQVLQPQFQPKSTGVVDLPSPDSVSSDSSLSNAISRQKAVIYQDQVQIQPGTTRVPSNPVDPKLNVSDPHGRIQMQQLVQDPGYLLQQQFEQQPPXQQPQQQQQQQFIHGTHFIHHAPPGAVPISAYYPVYPSQQQSHXQVYYVPARQPPAYNMPVQQPNMAESASXIPSSRPQTPPNPTTLVPPSAAYNPMRNAPMPKTEMTAAAYRAVSAGTPQLVQVPTSQHQQQYVAYSQIHHPSQSIAQNSAPPXNYAFDYADPAHAQIYYSQPLAPSMPSQYQTMTAAAMVMPDGSTQQXSDNMKQQIRTSQPL* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5000 732 MobiDBLite consensus disorder prediction 261 282 - -
Amo13g5000 732 Pfam PB1 domain 82 171 IPR000270 GO:0005515
Amo13g5000 732 Gene3D - 86 170 - -
Amo13g5000 732 MobiDBLite consensus disorder prediction 572 618 - -
Amo13g5000 732 MobiDBLite consensus disorder prediction 1 37 - -
Amo13g5000 732 MobiDBLite consensus disorder prediction 466 482 - -
Amo13g5000 732 MobiDBLite consensus disorder prediction 219 300 - -
Amo13g5000 732 MobiDBLite consensus disorder prediction 575 593 - -
Amo13g5000 732 MobiDBLite consensus disorder prediction 707 732 - -
Amo13g5000 732 SMART PB1_new 81 172 IPR000270 GO:0005515
Amo13g5000 732 MobiDBLite consensus disorder prediction 40 59 - -
Amo13g5000 732 MobiDBLite consensus disorder prediction 492 532 - -
Amo13g5000 732 MobiDBLite consensus disorder prediction 397 453 - -
Amo13g5000 732 MobiDBLite consensus disorder prediction 368 453 - -
Amo13g5000 732 SUPERFAMILY CAD & PB1 domains 82 180 - -
Amo13g5000 732 CDD PB1_UP2 70 170 - -
Amo13g5000 732 ProSiteProfiles PB1 domain profile. 66 172 IPR000270 GO:0005515
Amo13g5000 732 PANTHER EXPRESSED PROTEIN 29 723 - -
Amo13g5000 732 MobiDBLite consensus disorder prediction 1 61 - -
Amo13g5000 732 MobiDBLite consensus disorder prediction 466 538 - -
Amo13g5000 732 MobiDBLite consensus disorder prediction 230 252 - -
Amo13g5000 732 PANTHER OS05G0427100 PROTEIN-RELATED 29 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5000 Amo-Chr13 149101679 149104653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5000 43 200 MAP Kinase Kinase Kinase AT3G46920 35.542 1.10e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5000 - - gmx:100775954 877.085