Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4990 ATGGATCGGGATTATGATATGAGGCAGCATTCCCTCCTGAAAGTTCCCGGGGCCAAGCTCCGCCTGATGTGCAGCTATGGAGGCAATATCATGCCACGCCCCCGCCCCCACAACAACCACGACTCTCTCTACTACGTGGGCGGCGACACCCGCATGGTGGCTGTGGAGCGTAACACCTCCCTGAAGGACCTCTGTGCTGGCCTCTCCAACACCCTTCTCCATGGACGTCCCTTCACCCTCAAGTACCAGCTCCCCGAGGAGCAACTTGACAACCTCATCAGCGTGGCCACCGATGACGACCTCCAGAACATGATCCAAGAGTATGACCGCTTGGCTTCTTTCTCTCCTCCTCTGCGTCTCAGGGTCTTCCTCTTTGTCTCCAAACTAGACACGGCGGCTTCCATGGGTGCACTCCTGGACGATGCCAAGTCCGAGACGTGGTTCGTGGACGCTCTCAACAACTCGGGGATGATGAATAATATATCTCGTGTTGTTTCTGATTCTGCTGCTGTTGATGAATGTCTCCTCAGCCTTGTTGATGAAGTCCCAGTCCCACATAACACGGAGCAGGAAGTTAATAAGCAGCATTTGGGTGATGGCAGCAGCAAGGTGATGGACGAGCATTTTGCACAACTCACGCTTGGTTTGCCTTCTCCTGATTCTGTTGCAAGTGATAGTAGCATTGCATCTGCAGCAAGTTGTTCAATCTCAAAGGGGCAGGGGTTTTACTATCAAGAACAACAAGTGGATCCAAATCAGAATCAGCAGCAGCAATTTGTGTATATCCAACCCCACACTCACAACACTGGACATGGACATGGACAAGTGACAATGCCAACCTACCACAACACAGTGTATGTAGTGCCAGTTGACATTTCACAAGTGGCAACTAATTACCCAACTATGCTAACTACCCCAACCAATGTACCTGACATGCCTTCAACTCATCCTGCATTTCTTCAAACACCTTCCAATCAATATCAGCAACAACGCTATGTGCCTTTGCCTCATCATCCAATTGCAGTTGCCACAACCAATTATGGGGGTGGACCTAAGCAAGACCAGCAACTAGTATATTACACACAAACGCAAACCCAGCAGCAGCAATCCAGTGCTCCACAACCCCTTCAGTACCAATCCATGATCCCAGCAGCCAAAGAGTTCCCTCTGTGA 1173 0.5047 MDRDYDMRQHSLLKVPGAKLRLMCSYGGNIMPRPRPHNNHDSLYYVGGDTRMVAVERNTSLKDLCAGLSNTLLHGRPFTLKYQLPEEQLDNLISVATDDDLQNMIQEYDRLASFSPPLRLRVFLFVSKLDTAASMGALLDDAKSETWFVDALNNSGMMNNISRVVSDSAAVDECLLSLVDEVPVPHNTEQEVNKQHLGDGSSKVMDEHFAQLTLGLPSPDSVASDSSIASAASCSISKGQGFYYQEQQVDPNQNQQQQFVYIQPHTHNTGHGHGQVTMPTYHNTVYVVPVDISQVATNYPTMLTTPTNVPDMPSTHPAFLQTPSNQYQQQRYVPLPHHPIAVATTNYGGGPKQDQQLVYYTQTQTQQQQSSAPQPLQYQSMIPAAKEFPL* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4990 390 Pfam PB1 domain 43 126 IPR000270 GO:0005515
Amo13g4990 390 PANTHER OS05G0427100 PROTEIN-RELATED 9 201 - -
Amo13g4990 390 PANTHER OS05G0427100 PROTEIN-RELATED 209 264 - -
Amo13g4990 390 CDD PB1_UP2 23 125 - -
Amo13g4990 390 SUPERFAMILY CAD & PB1 domains 41 135 - -
Amo13g4990 390 SMART PB1_new 38 125 IPR000270 GO:0005515
Amo13g4990 390 Gene3D - 44 126 - -
Amo13g4990 390 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 9 201 - -
Amo13g4990 390 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 209 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4990 Amo-Chr13 148899877 148901136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4990 19 154 MAP Kinase Kinase Kinase AT5G57610 40.876 6.05e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4990 - - ahf:112783394 693.73