Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4986 ATGCGTGTTGTTACAACAGAGGCACCAACAACAGTAGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTGAGCCAGCGCAACCACATCATTGCAGAAGAAACAGATCCAAGGCCACAAATTCAATCCACAAGGTGCAAGTCCACCATTTCCTCCCTGCTCCTCTCCACATTCTCCAACAACAGCAATGATGGCGGGTCACAGAGCAGGAAAAAGAGCAACTTTTCAGCAGCAGCGACGTTGAGGGGGCTGGGGTGCACGGCGGGGGCGCCGCAGGAGGTATCGGTGCCGGCGGTGATCCGAAGCGCGGCGGAATGGGAAGGAAAGAAGGTGAGAAAGAAGAAGCACAAGAGAAGCAGCAAGGGAAGTTGCAGCAATAATGGCGTCGATGTGGATTTTCAAGATGTGTGGTGTGGCACCGCACACGGAATAGGGTTCTCTGCCGATTGTGTTGTTGGCACTTCCAGGAAGAATGCCTCTTCCTCTTCAAGACCCAAAATTGATGTTCACAAAATCAATCACAGACAGCGTTCATCTTCTTGTTTGGGAAGGCGCAGTTTGAACCCAGAAACCATCTCGCTTCTCGACACTGATCCTAGCGACGTTTTCACACCGCGCTCTGCCTCCGAGTTCTTTGGACCCGCCGCATACTATCGCCACCTTCCAGATCCTTCCACCGATGCTTTTCCTGAGATTATGATGCTTCAAGGAGGTATAATCATGGGGAGTAGATACTCACACGATCAATTCAGAGATTTGAGACTTGATGTTGATAACATGTCCTATGAACAATTGCTTGAGCTCGGTGAGAGAATTGGTTATGTCAACACTGGACTTAAAGAAAATGAGATGGGTGGCAACATAAGGAAAACTAAGCTTCAAATTTTAGATGATGCATCGAACCATCAAGTAGATAAAACGTGTACCATTTGCCAGGAGGAGTATGAAGCTGCTGATGAATTGGGGAGGTTACATTGTGAGCACAGCTATCACTTCCACTGTATAAAACAATGGGTTGCTCACAAGAATTTCTGTCCAGTGTGTAAGCAACAAGTTGTGGCTCGCAACAATTGA 1077 0.4773 MRVVTTEAPTTVAEHIKWRRPRNQLSQRNHIIAEETDPRPQIQSTRCKSTISSLLLSTFSNNSNDGGSQSRKKSNFSAAATLRGLGCTAGAPQEVSVPAVIRSAAEWEGKKVRKKKHKRSSKGSCSNNGVDVDFQDVWCGTAHGIGFSADCVVGTSRKNASSSSRPKIDVHKINHRQRSSSCLGRRSLNPETISLLDTDPSDVFTPRSASEFFGPAAYYRHLPDPSTDAFPEIMMLQGGIIMGSRYSHDQFRDLRLDVDNMSYEQLLELGERIGYVNTGLKENEMGGNIRKTKLQILDDASNHQVDKTCTICQEEYEAADELGRLHCEHSYHFHCIKQWVAHKNFCPVCKQQVVARNN* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4986 358 SUPERFAMILY RING/U-box 308 354 - -
Amo13g4986 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 356 IPR045191 GO:0061630
Amo13g4986 358 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Amo13g4986 358 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 7 356 - -
Amo13g4986 358 Pfam Ring finger domain 308 350 IPR001841 -
Amo13g4986 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 357 IPR013083 -
Amo13g4986 358 SMART ring_2 309 349 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4986 Amo-Chr13 148878155 148880314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4986 12 264 C3H Transcription Factor Family AT1G73760 39.789 6.59e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4986 - - gmx:100788837 433.335