Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4972 ATGTTGGGCAGTTCTTCTTCTTCTCCTCCTCCTGCAATGAAGCATGATGTGTTTATCAGCTTCAGAGGGAAGGATACTCGTGACGGCTTCACCAGCCATCTCTGCACAGCACTGCGCAAGAGACACATTGAAACTTACATGGATGACAGGCTTGTGAGAGGGGAAGAGATTTCACCCGCACCGGAGAAAGCAATTGAAGAATCCACCATTTATGTCATTGTTTTCTCCCAAGGCTATGCTTCTTCCCGGTGGTGTTTGGATGAACTCACCAAAATCATGGATTGCAAGCACAGATTCGGGAGGGAAGTGATTCCAGTTTATGAACAACCATTTGAGAAGCACCAACAGCGATACGAAGACAAAGTGCAGGGATGGAGATCTGCTCTATACCAAGCAGCTAATCTCTCCGGATGGGATTCACGAGCATTCAGACCTGAATCCATTCTTGTTGAAGAGATTGTGGAAGATATTTGGACAAAATTGAATAGTCAATCCATTAATGATAATGGAGGACTTGTTGGAATTGACAAGCATATTGAACAAGTTGAGTCCATCTTGCATGGTGATTCAGCAGATTTTCGGATCGTAGGGATTTGGGGCATGAGAGGAATAGGTAAAACAACAATTGCCCATGCATTATATCAGTACAAAAATGATGGAGGATATAGGGACAGGAGGCACATGCTTCAAAGACTGAAGGTTCTCCTCATTCTTGATAATGTGAACAGCGCAGATCAACTTGAGGATTTGATTGGAAGGCGTCGTAGCTTTGGTCCGGGAAGTAGAATTATTGTGACTAGTAGTGACAAACAAGTGCTCAACAATTTAACTGACGAAATTTATGAGGTTAAGAATATGGATTTTCAGGATTCTCTACAACTGTTCAGCTTACATGCCTTTAAACAAAACTACCCAATAGAATCCTACATGGAAGTATCAGAAAAGGTACTCAATTATGCTGAAGGGATTCCGTTAGCTCTCAAAGTTTTGGGCTATTTTCTTTATGGTAGAACAAGGGAAGCATGGGAAAGTGAGTTGCAAAAGTTGGAAAAACTTCCCAATCCTAAAATCTTCGATGTGTTGAAATTAAGTTTTGATGCGCTTGATGAGGAGCAACAAGATATATTTCTTGACATAGCCTGCTTTTATAGAGGGTATGAAGAGCATACTGCAAAACAAAAACTTAATGACTCTGGTTTCTCGGCTACCATTGGAATAGAAGTTCTCAAGGAGAGGTGTCTCATATCTGTTTTGAATCGGGAGATTGTGATGCATGACCTAATACAAGATATGGGACAAGAAATCATCCGTCGTCAAGGTGTCAAGGATCCTGGAAAACGCAGTCGATTATTTAAGCATCAGGACATTTATCAAGTTTTAAAAAAGAAAAAGGGGACAGAAGCAATCCAATGTATTGTGCTTGACATGTGCAAAATTAGAGAAGTTAACATACATTCCAAAACCTTCAAAATGATGCATAAACTGAGAATGCTCCAATTCTACACGTCAAAGTCAGCAAAAGACTCAAATGTACACATTCCTAAATTTCTTAAAAGTCTTCCGGATGAGCTAAGATTTCTTCGTTGGGATGGTTTCCCTCAAATATCTTTGCCACAGGACTTTTGCCCAGAAAATCTTGTTGAACTCAATATGCGTGATAGCCATCTTGAACGACTCTGGGACGGACATCAGGATTTACCAAATTTGAAAAGACTTGACCTCAGTGGTTCTCGGAAGCTGATTCAAATACCAGACCTCTCGCAGTCTCCAAATATTGAAGAAATAATTCTTAGTCATTGTGTAAAGTTGGATGTCGTTTACTCCTCTAGTTTCCTCGCCAAGCTCAGCTGCTTATGGTTGAATGGTTGTTATGAGCTTAGGATTTTAAATCTTCCTAGTAGTATCCTATTGGAATCTCTTGGTGTAATAGTTCTTTGTGACTGTCCTAGCCTTGAGATTGCTAAAGAATATGAAAACACCGAGGATAATATACACTTACTGAGGTTTAAAGTGTTGAGAGAAGGTTCGCCCTCGTCGTTCCCAGGTCTTGAAGAGATTTGTTGGTTAGATCTCTCTAATTGCGAATCCCTCACAATCCTTCCAGTTGAACTTCTCCAGATGAAATTTCTAAAAAGACTTGATCTCTGTGGCTGCTCAAGTTTGGAAAGTTTACCTGAAATAAACCAGACTATGGAAAATTTAACTGTTCTCATCTTAGACAAAACAGGAATACAAGAACTACCTTCATCCTTGCACCATTTCGTAGGGCTTGAAGAACTGAGCTTGTATGGGTGCCGAAGGCTTGAGTTTATTCCATCTTCCATCGGAAGTCTAAGTAGACTCTGCAAGCTGGACCTTACCTACTGTGAATTGCTTGAAACTATTCCAAGCAGCATTTTTAAGTTGAAGTTGTCAAAACTTGATTTACACGGTTGCTCAAGGCTGAGGATTTTGCCAGAGATCATGGAAGCTGCAAAAAGTATTGCACACCTTCGGTTAACAAAAGCTGCAGTAAAAGAATTGCCTTTGTCATTGGACCGTTTGGAAGGCCTTACAACGTTGTGCTTATCATTGTGCAGTGATCTAGAGTTCCTTCCGAGCAACATTGTTAATCTAGGCCTTCTCTCTGATCTCGATTGTTCTGGTTGCGTCAATTTAACAAAAATCCCAAATAACATTGATCGTTTGTCATCACTAAGAGAATTGTCATTGCAGGGAAGTGGTATTGTGAACCTTCCTGAGAGTATTGCTCATCTTTCAAGCTTGAAATCATTGGATTTAAGTGATTGCAAAATGCTTGAATGCATCCCTGTGCTTCCACCATTTCTATAA 2832 0.4032 MLGSSSSSPPPAMKHDVFISFRGKDTRDGFTSHLCTALRKRHIETYMDDRLVRGEEISPAPEKAIEESTIYVIVFSQGYASSRWCLDELTKIMDCKHRFGREVIPVYEQPFEKHQQRYEDKVQGWRSALYQAANLSGWDSRAFRPESILVEEIVEDIWTKLNSQSINDNGGLVGIDKHIEQVESILHGDSADFRIVGIWGMRGIGKTTIAHALYQYKNDGGYRDRRHMLQRLKVLLILDNVNSADQLEDLIGRRRSFGPGSRIIVTSSDKQVLNNLTDEIYEVKNMDFQDSLQLFSLHAFKQNYPIESYMEVSEKVLNYAEGIPLALKVLGYFLYGRTREAWESELQKLEKLPNPKIFDVLKLSFDALDEEQQDIFLDIACFYRGYEEHTAKQKLNDSGFSATIGIEVLKERCLISVLNREIVMHDLIQDMGQEIIRRQGVKDPGKRSRLFKHQDIYQVLKKKKGTEAIQCIVLDMCKIREVNIHSKTFKMMHKLRMLQFYTSKSAKDSNVHIPKFLKSLPDELRFLRWDGFPQISLPQDFCPENLVELNMRDSHLERLWDGHQDLPNLKRLDLSGSRKLIQIPDLSQSPNIEEIILSHCVKLDVVYSSSFLAKLSCLWLNGCYELRILNLPSSILLESLGVIVLCDCPSLEIAKEYENTEDNIHLLRFKVLREGSPSSFPGLEEICWLDLSNCESLTILPVELLQMKFLKRLDLCGCSSLESLPEINQTMENLTVLILDKTGIQELPSSLHHFVGLEELSLYGCRRLEFIPSSIGSLSRLCKLDLTYCELLETIPSSIFKLKLSKLDLHGCSRLRILPEIMEAAKSIAHLRLTKAAVKELPLSLDRLEGLTTLCLSLCSDLEFLPSNIVNLGLLSDLDCSGCVNLTKIPNNIDRLSSLRELSLQGSGIVNLPESIAHLSSLKSLDLSDCKMLECIPVLPPFL* 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4972 943 Pfam NB-ARC domain 227 351 IPR002182 GO:0043531
Amo13g4972 943 SMART till_3 14 135 IPR000157 GO:0007165
Amo13g4972 943 SUPERFAMILY L domain-like 470 726 - -
Amo13g4972 943 SUPERFAMILY "Winged helix" DNA-binding domain 356 461 IPR036390 -
Amo13g4972 943 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 138 IPR035897 -
Amo13g4972 943 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 757 942 - -
Amo13g4972 943 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 227 705 - -
Amo13g4972 943 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 227 705 IPR044974 GO:0006952
Amo13g4972 943 Gene3D Ribonuclease Inhibitor 834 939 IPR032675 -
Amo13g4972 943 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 757 942 IPR044974 GO:0006952
Amo13g4972 943 Gene3D - 162 223 IPR027417 -
Amo13g4972 943 Gene3D - 224 285 IPR027417 -
Amo13g4972 943 ProSiteProfiles TIR domain profile. 13 161 IPR000157 GO:0007165
Amo13g4972 943 Pfam Leucine Rich Repeat 545 564 IPR011713 -
Amo13g4972 943 Gene3D - 10 161 IPR035897 -
Amo13g4972 943 SUPERFAMILY RNI-like 676 934 - -
Amo13g4972 943 Gene3D Ribonuclease Inhibitor 452 665 IPR032675 -
Amo13g4972 943 Gene3D Ribonuclease Inhibitor 666 833 IPR032675 -
Amo13g4972 943 Gene3D - 286 369 IPR042197 -
Amo13g4972 943 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 215 - -
Amo13g4972 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 379 IPR027417 -
Amo13g4972 943 PRINTS Disease resistance protein signature 320 334 - -
Amo13g4972 943 PRINTS Disease resistance protein signature 195 210 - -
Amo13g4972 943 PRINTS Disease resistance protein signature 917 933 - -
Amo13g4972 943 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 678 771 IPR044974 GO:0006952
Amo13g4972 943 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 215 IPR044974 GO:0006952
Amo13g4972 943 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 678 771 - -
Amo13g4972 943 Pfam TIR domain 14 173 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4972 Amo-Chr13 148732009 148736644 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4972 777 937 WRKY Transcription Factor Family AT4G12020 34.568 2.63e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4972 - - ccaj:109803335 1043.88