Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4965 ATGGCCGCCAACAACAATCCGCATTCTCTCACTGATCAGAATGCGAATTCTATGCTTCCGCCTATTCTTGATCATCAATTCTCCACTACCCCTGCTCTTAGGCTTCTGGTCGTTGATCATGATCCTGAACACTTAAGACTTATTCAAGATATCGCTTTTCAATGCAACTATCAAGTGACCACATGCTTCGAGGGTTCTCATGCTTTGAATCTTCTTCGGGAGAGCAGTGGGTGCTTCGATGTGGTACTATGTGATGTTCATATGCCAGGGATAATGGATGATGGTTCTCGGTTACTTGACCATGTTCTCCAAGAATTCAATATTCCTGTCGTAATGATGTGTGCAACAGATGATGAGTCATCAAGTGCAGTGATGGAGGGTATGAAAAAGAAAGGGGCTTGTTATAATTTAGTTAAACCTCTTAGCGAGCAAGATTTGAGGAACATGTGGCAGAATGTGGTGGAGAAAACCCAGAAAGAAGTTTGCTATGATGATGATGAGAGCAAAGGAACAGTTAATAGAAGGAAGAGGAGCTTATCAACGGAAAGAGACGATCATGATCATGATGTTCAGTCCAACACTCCTAACAAGAAGCCACGTTTTATTTGGACCCCAGAAAGGCATCAAATGTTCGTCGATGCTGTACTCCAACTAGGGATTGATAAAGCTGTGCCAAAGAAAATTCTAGAATTGATGGATATCCCTGACTTGACACGGGAAAATGTAGCAAGCCATCTCCAGAAATATCGGATGCATCTTAAGCAGAAGAGTGAGGAGACTATGCAAACAAATATTATTGGGAAGCTAAATGTTAATAGAGAAGCTAATAAGCAACTTTGTGCACCATTGAGGGTTCAAGCTACAACCAACGTTCCTCAAATTCCACAAACACTGCCTCTTCATCACCAATATTATTCTTCATTATCTGTGCCAACTGTTAGTGCTGCACCTCATGCTTTGAAATTCCCTAATAGTAACTCCTTTGGTCTCATCAACAACAATGGCATTGTTGGAAGTAACATGATTAACTCTGGAAAGAAAGAAAGAACTTAA 1053 0.4103 MAANNNPHSLTDQNANSMLPPILDHQFSTTPALRLLVVDHDPEHLRLIQDIAFQCNYQVTTCFEGSHALNLLRESSGCFDVVLCDVHMPGIMDDGSRLLDHVLQEFNIPVVMMCATDDESSSAVMEGMKKKGACYNLVKPLSEQDLRNMWQNVVEKTQKEVCYDDDESKGTVNRRKRSLSTERDDHDHDVQSNTPNKKPRFIWTPERHQMFVDAVLQLGIDKAVPKKILELMDIPDLTRENVASHLQKYRMHLKQKSEETMQTNIIGKLNVNREANKQLCAPLRVQATTNVPQIPQTLPLHHQYYSSLSVPTVSAAPHALKFPNSNSFGLINNNGIVGSNMINSGKKERT* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4965 350 Pfam Response regulator receiver domain 36 149 IPR001789 GO:0000160
Amo13g4965 350 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 29 282 - -
Amo13g4965 350 MobiDBLite consensus disorder prediction 164 200 - -
Amo13g4965 350 SMART REC_2 33 150 IPR001789 GO:0000160
Amo13g4965 350 Gene3D - 32 170 - -
Amo13g4965 350 Gene3D - 194 256 - -
Amo13g4965 350 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 282 IPR045279 GO:0009736
Amo13g4965 350 SUPERFAMILY CheY-like 33 157 IPR011006 -
Amo13g4965 350 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 252 IPR006447 GO:0003677
Amo13g4965 350 ProSiteProfiles Response regulatory domain profile. 34 154 IPR001789 GO:0000160
Amo13g4965 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 254 IPR017930 -
Amo13g4965 350 MobiDBLite consensus disorder prediction 164 194 - -
Amo13g4965 350 SUPERFAMILY Homeodomain-like 196 254 IPR009057 -
Amo13g4965 350 CDD REC_typeB_ARR-like 36 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4965 Amo-Chr13 148682330 148685241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4965 32 328 Response Regulator Gene Family AT5G58080 38.095 7.13e-48 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo13g4965 Response_reg 4.8e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4965 - K14491 adu:107481405 694.501