Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4957 ATGGCTGAGCGCGGTGGCGGAGATCGTGGCGGATTCGGGCGTGGCTTCGGAGGTCGCGGTGGTCGGGGCGACAGGGGCCGCGGTGGGCGTCGTAGGGGCGGTGGACGCCGCGAGGAAGAGGAGAAGTGGGTTCCAGTCACGAAGCTGGGTCGCCTCGTGAAAGAGAAAAAGATCAGTAGTCTCGAACAAATCTACCTTCACTCTCTCCCAATCAAGGAGCACCAAATCGTTGACCAGTTGGTTGGTCCTTCTTTGAAGGATGAAGTCATGAAGATCATGCCCGTTCAGAAACAGACACGTGCCGGTCAGAGAACCCGTTTCAAGGCCTTCGTTGTCGTCGGTGACAACAACGGCCACGTCGGACTCGGTGTCAAGTGCAGCAAGGAGGTCGCAACTGCCATTCGCGGTGCCATCATATTGGCGAAGCTTTCGGTGATTCCTGTTAGGAGAGGTTATTGGGGTAACAAGATCGGAAAGCCACACACCGTTCCCTGCAAGGTCACCGGGAAATGTGGTTCCGTCACCGTCCGTATGGTGCCTGCTCCTCGTGGTTCCGGAATTGTTGCTGCTAGGGTTCCCAAGAAGGTCTTGCAATTTGCAGGGATTGATGATGTATTCACTTCTTCTAGAGGATCCACCAAGACCCTTGGAAATTTCGTGAAGGCCACATTCGAGTGTTTGCTGAAAACCTACGGTTTCCTTACACCTGATTTCTGGAGGGAGACTCGCTTCTCCAAATCTCCATTCCAAGAGTACACTGATTTCCTTGCCAAGCCAACGACCAAGGCCCATATCTTGGAGGATGAAACGGTCGAGGCTTAA 822 0.5401 MAERGGGDRGGFGRGFGGRGGRGDRGRGGRRRGGGRREEEEKWVPVTKLGRLVKEKKISSLEQIYLHSLPIKEHQIVDQLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFSKSPFQEYTDFLAKPTTKAHILEDETVEA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4957 273 ProSitePatterns Ribosomal protein S5 signature. 102 134 IPR018192 -
Amo13g4957 273 ProSiteProfiles S5 double stranded RNA-binding domain profile. 85 148 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo13g4957 273 MobiDBLite consensus disorder prediction 20 41 - -
Amo13g4957 273 Pfam Ribosomal protein S5, N-terminal domain 85 149 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo13g4957 273 Gene3D - 148 240 IPR014721 -
Amo13g4957 273 SUPERFAMILY dsRNA-binding domain-like 81 150 - -
Amo13g4957 273 Pfam Ribosomal protein S5, C-terminal domain 169 240 IPR005324 GO:0003735|GO:0005840|GO:0006412
Amo13g4957 273 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 269 - -
Amo13g4957 273 Gene3D - 42 147 - -
Amo13g4957 273 MobiDBLite consensus disorder prediction 1 41 - -
Amo13g4957 273 SUPERFAMILY Ribosomal protein S5 domain 2-like 161 241 IPR020568 -
Amo13g4957 273 PANTHER RIBOSOMAL S SUBUNIT 1 269 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo13g4957 273 TIGRFAM uS5_euk_arch: ribosomal protein uS5 38 245 IPR005711 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4957 Amo-Chr13 148604775 148606230 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4957 39 272 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 86.441 1.47e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4957 K02981 - gmx:100797105 457.218