Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4944 ATGGAGAGAGATTTCATGGGTCTAAGCTCAAAGGAGCCACTTGTGGTCAAAGAAGAGATCAACGATGATGGCTCCAAAGATTCTGGCTTCACCAAGGGCTCTACTGCTCAGTGGCTTTTCTCAAGCAAAGTYTCTGCTGTTCCACACTTGATGTCTTTTAAGGTTTCTCAAGATGAGAAGCCTTTTGACTCCACTCTAAAGTTCCCTGCTCCTGAACTTCAGAAATCTTTCAATCACAATGGACAAGGTGGCTTTCATTTTTCCATGACTCCGTATCCTGTACAACATGATGTGAATTCTGTGAATCGTCCTCACGATGTGAAGATGTTTTCAGTTTCCAATCAAGCAATTTCAGTTTCTGTGGGGAATCCATACCTGAAGAATCACTTTGCATCGGCTGCTCAGAATATAGGCAGTGCTAATGTGAAGCAGACATTACTTGGGGGAATACCAATTACACCAACCATCGGTGCTGTTGCTGAACGCAATGTGAAAACAGCTCCAYCTTCTGCACAACTTACAATCTTCTATGCGGGTACTGTTAATGTCTTCCAAGATATCTCTGCTGAAAAGGCACAAGCTATTATGTTGTTGGCTGGCAATGAGTTGGCACAGCCCAAGGTTCAGGCAGGTGGTTCAAAATTGGGAGCCGGTGATAGTGTGGCTGTTAATACACCACCTAGCTCCGGTGTTCCAAGTCCTTTATCCGTCTCATCGCATTCGGGTGCGCAGTCAGGGAGTGGCTCCACTAGTACTGATGAATTTCTGACTGCTAAAACGACCGGGGTTCCCACCGGTTCTGTTAGTAAGGTGGAGCCTCCGAAAGTAGTGAGCGCAACCACTATGTTGACTTCAGCTGTGCCACAGGCTCGTAAAGCATCGTTGGCTCGTTTTCTAGAGAAGCGCAAGGAGAGGGTGATGAATTCAGCACCATATAACCTGAACAAGAAGAGTGAGGAGTATGGCACTGCAGAACACAATGTTGCTACCAGCACTGGTTCAAATGCTCTACCACTACAAGTGAAGCAAGGATAG 1035 0.4609 MERDFMGLSSKEPLVVKEEINDDGSKDSGFTKGSTAQWLFSSKVSAVPHLMSFKVSQDEKPFDSTLKFPAPELQKSFNHNGQGGFHFSMTPYPVQHDVNSVNRPHDVKMFSVSNQAISVSVGNPYLKNHFASAAQNIGSANVKQTLLGGIPITPTIGAVAERNVKTAPXSAQLTIFYAGTVNVFQDISAEKAQAIMLLAGNELAQPKVQAGGSKLGAGDSVAVNTPPSSGVPSPLSVSSHSGAQSGSGSTSTDEFLTAKTTGVPTGSVSKVEPPKVVSATTMLTSAVPQARKASLARFLEKRKERVMNSAPYNLNKKSEEYGTAEHNVATSTGSNALPLQVKQG* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4944 344 MobiDBLite consensus disorder prediction 324 344 - -
Amo13g4944 344 MobiDBLite consensus disorder prediction 317 344 - -
Amo13g4944 344 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 12 330 IPR040390 -
Amo13g4944 344 MobiDBLite consensus disorder prediction 222 267 - -
Amo13g4944 344 ProSiteProfiles Tify domain profile. 166 201 IPR010399 -
Amo13g4944 344 SMART tify_2 166 201 IPR010399 -
Amo13g4944 344 PANTHER PROTEIN TIFY 7 12 330 - -
Amo13g4944 344 Pfam Jas motif 288 312 IPR018467 -
Amo13g4944 344 MobiDBLite consensus disorder prediction 209 270 - -
Amo13g4944 344 Pfam tify domain 168 200 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4944 Amo-Chr13 148464796 148467959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4944 38 318 Tify Gene Family AT3G17860 34.062 2.84e-29 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Amo13g4944 tify 4.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4944 K13464 - gmx:100807043 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4944 13 148464796 148467959 Amo13g4944 13 148464796 148467959 ECH