Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4874 ATGGGCAGGTCACCATGCTGTGAGAAGGTTGGGTTGAAGAAAGGGCCCTGGACTCCCGAAGAAGACCAAAAGCTCATGTCCTATATTGAAAAACACGGCCATGGAAGCTGGCGTGCTTTGCCTTCCAAAGCTGGACTCCAAAGATGTGGAAAGAGTTGTCGACTGAGGTGGACTAACTACCTCCGACCAGATATAAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATTATTCAGCTTCATGCCCTTCTTGGAAACAGATGGTCAGCAATAGCGGCTCAGCTTCCCAAGAGGACGGACAACGAGATCAAAAACTACTGGAACACGCACCTAAAGAAGAGGCTAACAAGAATGGGAATAGATCCCACAACCCACAAGCCCAAAACTGATCCCATCGGCGCTGGCTCAGACACCAACTCCGCTTCGCAATCCAAGGACTTGGCCAATCTGAGCCACATGGCGCAGTGGGAGAACGCTCGTCTCGAAGCGGAAGCCAGGTTGGTGAGAGAATCCAAGCTTCTTCTTCAGGCCCAGCAGACACAACAAACAACCACAACACAACCTCCTCCGGCGCGCCTCGTCCTTAACAAGATCACGGCGGCTCAACAACAGCCCTTGCTTCCGCCCTGCCTTGACGTGCTCAAGGCCTGGCAGAACTCATGGTCTTCCAAGCCGCAGCTTTCCGTACCATCAAGGGAAAATTTCAAGATGCATAGTATGTATGCCATGATGCTCTCCACTGATGAGAATCTTGAATCTCCAACTTCCACCTTGTGCTTTCCTGGAAGTGGAAGTAGCGCCATGCTTCCCATCATGTCCTCCACAACCACCTCCGCCACTACTATCACAGTAGATGCTCTCAACGAAAACTTACTTAATCCTTCTCTCACCAAAACTAAGATTGATAGCAACGGCACCATGGTAACCCCATGTGACGAAGGAGTGTTCATTACGAAAGGAGGTAATAATAATGAAACTGACTCATCATGGTACATGTTGAAACAGAACAACCCTGAAATAGAACTTGATGACGATGAAATAGTGGAAAATAATAATAACAACAATAATAACGGCTTCAGAGATGACGACATCATGGTGGCAGTGGAAGCATTCAGAGGAAGAGGCGGAGGGGCTTACGACGGTGTTAATGTTGTCCCACCAACACTGTCCTCAACCGGCGATGTTGTGGTCATGGAAGCAGGACTCATATGCAGTAGCAATAACAACGGTGATGATGATGCCCACATGCCTTACCATTCCAACGACACCTTGGCAATCATCAATGATGGTGATGGAAGCATATGTAACGTCAGCCTCGAAGAGAATAAGCATTATTGGAACACCATACTTAACTTGGTCAATGATGCTCAAGTCATGTTCTAA 1386 0.4798 MGRSPCCEKVGLKKGPWTPEEDQKLMSYIEKHGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDPIGAGSDTNSASQSKDLANLSHMAQWENARLEAEARLVRESKLLLQAQQTQQTTTTQPPPARLVLNKITAAQQQPLLPPCLDVLKAWQNSWSSKPQLSVPSRENFKMHSMYAMMLSTDENLESPTSTLCFPGSGSSAMLPIMSSTTTSATTITVDALNENLLNPSLTKTKIDSNGTMVTPCDEGVFITKGGNNNETDSSWYMLKQNNPEIELDDDEIVENNNNNNNNGFRDDDIMVAVEAFRGRGGGAYDGVNVVPPTLSSTGDVVVMEAGLICSSNNNGDDDAHMPYHSNDTLAIINDGDGSICNVSLEENKHYWNTILNLVNDAQVMF* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4874 461 Gene3D - 69 116 - -
Amo13g4874 461 CDD SANT 69 112 IPR001005 -
Amo13g4874 461 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo13g4874 461 CDD SANT 16 61 IPR001005 -
Amo13g4874 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo13g4874 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo13g4874 461 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo13g4874 461 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 457 - -
Amo13g4874 461 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 457 - -
Amo13g4874 461 MobiDBLite consensus disorder prediction 120 144 - -
Amo13g4874 461 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo13g4874 461 SMART sant 66 114 IPR001005 -
Amo13g4874 461 SMART sant 13 63 IPR001005 -
Amo13g4874 461 Gene3D - 13 66 - -
Amo13g4874 461 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo13g4874 461 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4874 Amo-Chr13 147652633 147654424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4874 1 261 MYB Transcription Factor Family AT3G01140 62.595 3.57e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g4874 Myb_DNA-binding 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4874 K09422 - gmx:100799222 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4874 13 147652633 147654424 Amo13g4874 13 147652633 147654424 ECH