Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4872 ATGGCGGAAGAGGAGTACATTCAGCAACTGAGGTCCAAAGCAGCAGAGCTTTTCCTCAGAGAAGAATGGAATGACTCCATTGACGTCTACTCCAACCTCATCTCTCACTGCACCCACCACCAACAACAACTCTCTCTTCATCATCCAAATCACCTCCAAAAGCTTCACAAATCACTCTGCATTGCCCTCTGCAACCGCGCCGAAGCCAGGTCTCGCCTTCGCGACTTCCATTGCGCCTTGCAAGACTGCGATCGCGCATTGCAGATCGATGCATCGCATTTCAAGACCCTGCTATGCAAAGGTAAGATCCTGCTCTGCCTCAATAGGTACTCGATGGCGCTTGAATGTTTTAAAGCAGCTTTGCTTGATTCCCAAGCTCCTCCGGAGCTTGCAGAGTACATTGGTGCGGTGGAGATCAGGAAATCAGATATCAGCGGCCGCGGCCTTTTCGCAACCAAGAACATTGATGCAGGGTCGTTGATCTTGGTCACCAGGGCAATTGTAATGGAGAGGAGTATATTGGCAGGTAAGGATTTAAGCGAGGATGCGCAGTTAGCAATGTGGAAGAATTTCATTCAAAAAGTTTCTGAATTTGCAAGGAAATGTTACAAAACCCGGGATTTGATTGGTATGTTGTCAATTGGGGAAGATGAGGAAGAACTTGAGATTCCTGATATAGATTTGTTTAGGCCTGAGAATGTTGGGAACATGGATTCATGTGAAATGATTGATATGGAGAAGTTGCTGGCCATTTTGGATGTGAATTCACTCACAGAGGATGCTGTTTCGGCCAATGTGTTGAGGAAGAACAATGATTCCTATGGTGTTGGATTGTGGCTATTACCTTCCTTCATCAACCATTCATGCTGTCCAAATTCGCGGCGACTGCATGTTGGGGACTACTTAATAGTTCATGCTTCTAAGGATATGAAGGCCGGAGAAGAGATCACTTTTGCCTATTTAGATCCGCTTAGTCCTCTGAGCAAGCGAAGGGAGATGTCGATGACTTGGGGGATTCAATGCAAGTGTAAGAGGTGTAGATTTGAAAACGAGGTTTTCGCCAAACAAGAGATTAAAGAGATTGAGATTGGACTTGAAAGAGGGATGGATGTTGGTGGTGTGGTTTATAAATTGGAGGAACACATGAAGAGATTGAAGGCTTATAGGTCTGATAGGTCTATGAAGAGGTGGGGAAGGCGCATTCCAGCCATGGATGCCGTGGTGGATAGCGTGGTTGATGTGGTGGGAGGTGATCATAGGCTGCTTAAGATCATGGTGGAGGAGTTGAAGAAAAATGGTGGCGGTGGCAGCGGCCTTGTGGGGATGGAAAAAGCTTTAAAGCTAGCAAGAGATGTGTATGGGAAGGTAGTGAAAAAGCAAGCAATGAAGACACTTGTTGAGTTTTGCATTGGTGATTGA 1419 0.4609 MAEEEYIQQLRSKAAELFLREEWNDSIDVYSNLISHCTHHQQQLSLHHPNHLQKLHKSLCIALCNRAEARSRLRDFHCALQDCDRALQIDASHFKTLLCKGKILLCLNRYSMALECFKAALLDSQAPPELAEYIGAVEIRKSDISGRGLFATKNIDAGSLILVTRAIVMERSILAGKDLSEDAQLAMWKNFIQKVSEFARKCYKTRDLIGMLSIGEDEEELEIPDIDLFRPENVGNMDSCEMIDMEKLLAILDVNSLTEDAVSANVLRKNNDSYGVGLWLLPSFINHSCCPNSRRLHVGDYLIVHASKDMKAGEEITFAYLDPLSPLSKRREMSMTWGIQCKCKRCRFENEVFAKQEIKEIEIGLERGMDVGGVVYKLEEHMKRLKAYRSDRSMKRWGRRIPAMDAVVDSVVDVVGGDHRLLKIMVEELKKNGGGGSGLVGMEKALKLARDVYGKVVKKQAMKTLVEFCIGD* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4872 472 Pfam SET domain 146 320 IPR001214 GO:0005515
Amo13g4872 472 SMART tpr_5 7 40 IPR019734 GO:0005515
Amo13g4872 472 SMART tpr_5 60 93 IPR019734 GO:0005515
Amo13g4872 472 SMART tpr_5 94 127 IPR019734 GO:0005515
Amo13g4872 472 CDD SET 138 165 - -
Amo13g4872 472 SMART set_7 135 327 IPR001214 GO:0005515
Amo13g4872 472 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 124 455 - -
Amo13g4872 472 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 3 122 - -
Amo13g4872 472 Gene3D SET domain 236 353 IPR046341 -
Amo13g4872 472 ProSiteProfiles SET domain profile. 135 321 IPR001214 GO:0005515
Amo13g4872 472 CDD SET_SMYD 249 346 - -
Amo13g4872 472 SUPERFAMILY TPR-like 6 141 IPR011990 GO:0005515
Amo13g4872 472 SUPERFAMILY SET domain 135 346 IPR046341 -
Amo13g4872 472 Gene3D Tetratricopeptide repeat domain 4 144 IPR011990 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo13g4872 SET 4.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4872 - - mtr:MTR_4g082140 677.167