Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4871 ATGGAAGGAAGTAGTAGAAGTTGTGAACTACTACCACCAGGGTTTAGATTCCACCCAACAGATGAGGAGCTAATTGTGTATTACCTTTGTAACCAAGCAACATCAAAGCCCTGCCCTGCTTCCATCATCCCTGAAGTTGACATCTACAAATTTGATCCATGGGAATTGCCAGGGAAAGCTGAGTTTGGGGAGAAAGAATGGTACTTCTTTAGCCCAAGGGACAGGAAGTATCCGAATGGGGTTCGGCCGAACCGTGCAACGGTTTCTGGGTATTGGAAGGCCACAGGGACAGACAAGGCTATTTACAGCAAGTGTAAGCATGTTGGTGTCAAGAAGGCCTTGGTTTTCTACAAGGGTAGACCTCCAAAGGGGATCAAGACTGATTGGATCATGCACGAATATCGTCTTCTTCAACAATCTAATCACAACAGCAGGACCACTGGTTCTATGAGACTGGATGACTGCGTCTTGTGTAGGATATATAAGAAAAAACATGCTGCTAAAGCATTGGATCAAGGACAGGAATACCCAACAACAGTTCAAATTAATCTAAATGCATCAACCAACAATGATGATCAGAAGGAGTTGATGATGATGAAGAATCTTCCAAGGACTTGTTCCCTTACTTATCTTTTGGACATGAATTACTTTGGTCCAATCTCACAGCTATTGTCTGATGGATCCTACAACAACTCATCAACCTTTGAAATATGTCAACATAGCAATAGTGTTGACAACATTGGAATAGTGGATCCTCTTGTCAAAACTCAAATGGTTGAAATGGATGATAGCTATTATGCTCAAGATTCAGGCAAGTCCCAAGTGATGAAACAAGGGAATGATTTAAGAGGATATTACTAA 861 0.417 MEGSSRSCELLPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPGKAEFGEKEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYSKCKHVGVKKALVFYKGRPPKGIKTDWIMHEYRLLQQSNHNSRTTGSMRLDDCVLCRIYKKKHAAKALDQGQEYPTTVQINLNASTNNDDQKELMMMKNLPRTCSLTYLLDMNYFGPISQLLSDGSYNNSSTFEICQHSNSVDNIGIVDPLVKTQMVEMDDSYYAQDSGKSQVMKQGNDLRGYY* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4871 286 ProSiteProfiles NAC domain profile. 11 163 IPR003441 GO:0003677|GO:0006355
Amo13g4871 286 PANTHER NAC DOMAIN-CONTAINING PROTEIN 1 9 261 - -
Amo13g4871 286 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Amo13g4871 286 PANTHER NAC TRANSCRIPTION FACTOR 56 9 261 - -
Amo13g4871 286 SUPERFAMILY NAC domain 9 163 IPR036093 GO:0003677|GO:0006355
Amo13g4871 286 Pfam No apical meristem (NAM) protein 12 136 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4871 Amo-Chr13 147550031 147551323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4871 1 223 NAC Transcription Factor Family AT1G69490 65.801 7.45e-109 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo13g4871 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4871 - - adu:107489303 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4871 13 147550031 147551323 Amo13g4871 13 147550031 147551323 ECH