Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4869 ATGGCTATCATTGGGTTTCTCTTGGTTAGTTTTCTTACTATGTTCTCCTCAGCTTACGCCAATGGTGGAGCAGGATGGACCAATGCTCATGCTACCTTCTATGGTGGGGGTGATGCATCAGGGACAATGGGTGGGGCTTGTGGATATGGAAACCTCTATAGCCAGGGGTACGGAACAACCACTGCTGCTTTGAGCACTGCACTTTTCAACAATGGCTTGAGCTGTGGCTCTTGCTATGAGATTAAGTGTGTGAATGACCAGAAATGGTGCCTCCCTGGCTCCATTGTGGTCACTGCCACTAACTTCTGCCCTCCAAACAATGCATTGCCAAACAATGCAGGTGGGTGGTGCAACCCTCCTCTTCACCACTTTGATCTAGCTCAGCCTGTGTTCCTCCGCATTGCTCAATACAAAGCTGGAATAGTCCCTGTCGCTTACAGGAGGGTGGCATGCAGGAGAAGAGGAGGAATAAGGTTCACTATTAATGGTCATTCCTACTTCAACCTAGTACTAATCACAAACGTTGGTGGTGCTGGTGATGTTCATTCTGTGTTCATCAAGGGTTCAAAAACCGGTTGGATGCCAATGTCAAGAAACTGGGGACAAAACTGGCAGAGCAACAACTACCTCAATGGCCAAAGCCTCTCTTTCAAGGTCACTACAAGTGATGGCCGTACAGTGGTCTCTAACAATGTTGCCCCAGCTGGTTGGACCTTTGGCCAAACCTACACTGGTGCTCAATTCCACTAG 750 0.4853 MAIIGFLLVSFLTMFSSAYANGGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTTTAALSTALFNNGLSCGSCYEIKCVNDQKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVAYRRVACRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVFIKGSKTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSNNVAPAGWTFGQTYTGAQFH* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4869 249 PANTHER EXPANSIN 5 249 - -
Amo13g4869 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Amo13g4869 249 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Amo13g4869 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Amo13g4869 249 SUPERFAMILY Barwin-like endoglucanases 10 174 IPR036908 -
Amo13g4869 249 SMART dpbb_1 61 146 IPR007112 -
Amo13g4869 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Amo13g4869 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Amo13g4869 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Amo13g4869 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Amo13g4869 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Amo13g4869 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Amo13g4869 249 PANTHER EXPANSIN-A15 5 249 IPR002963 GO:0009664
Amo13g4869 249 Gene3D - 12 152 IPR036908 -
Amo13g4869 249 Gene3D - 156 249 IPR036749 -
Amo13g4869 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Amo13g4869 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Amo13g4869 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Amo13g4869 249 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Amo13g4869 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Amo13g4869 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Amo13g4869 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Amo13g4869 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Amo13g4869 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Amo13g4869 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Amo13g4869 249 Pfam Lytic transglycolase 61 146 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4869 Amo-Chr13 147492676 147494419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4869 1 249 Expansin Gene Family AT2G03090 79.920 1.09e-149 416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4869 13 147492676 147494419 Amo13g4869 13 147492676 147494419 ECH
Amo13g4869 13 147492676 147494419 Amo20g3337 20 141866776 141869548 ECH