Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4868 ATGGGTAGGGTAAAGCTGAAGATAAAGAAGCTAGAGAACATGAATGGGCGTCAAGCAACATATGCTAAAAGGAAGAATGGAATTATCAAAAAGGCTACAGAGTTATCTATTCTTTGTGATATTGATATTATACTTCTCATGTTCTCACCAACTGGAAAACCTTCTTTGTGTAGAGGCAGGCGAAGTAACTTTGAGGAGGTTATTGCAAAGTTTTCTCAACTAACTCCACAAGAAAGAGCAAAAAGGAAGTTGGAGAGTCTTGAGGCACTGAAAAAGACATTTAAGAAGTTAGATCATGATGTAAATATACAAGAATTTTTGGGTACAAGTAGTCAAACTATTGAGGACCTAAGTAATCAAGCTAGGCTATTACAGACTCAAATTTCTGAAACACAGAAGAGATTAAGTCAGTGGAAGGAATTTGAAAAAATCAATAATGTGGAACAACTTGAACAGATGGAAAATTCATTGAGAGATTCAATCAATCAAATTCGAAACCGTAAGGAACATATTAAAAACCAACAGCTTGTATCACTGCAATGCAATAACCAGTTCAATGAAATGCATATTCCGTTTAGAATGGGTACTGAGCAGCATCTCCAACCTCTACCATGGATTGGTAATGGTGACAGCCCAAATCTAGTTTTACCTGATGACTCTAGCTTGCTTCTCCACAAAGATGTAGAGGGATCTGCAAGCTCATCATTTGGGAGTTATGCAAGTTACATTGGATCAAGTAGTAAAACAGATATTTCAAACTCGGGGCAAGAAAATGGTGTCCTAAGTGATTTGAGCAGCACTACTGCTCCATTGAGACTACCATTGAATAATGGACATCAGTTTCCATACATGCCATCATACAATTTCAATTTGCTGAATGATTTCAAGTTCCAAGCAGCTCCAGAGATGAACCATCATCATAATCAGCCACAAGAAAACCATAATTTAAGTTTTCATCATCATGTCAACAATGGAAACTTTGAAGCCCCAAGGAATGCTTATGACTCCAATCACCACCACCACCATGGTTGGGCTTCCACTTCAGGGCCTTGTGCTGTTACTATGTTTGATGAGCATTTGTATGCCCAGGCAAGTTTACCTCAAGTCAACTTTGGTTCAACATAG 1125 0.3813 MGRVKLKIKKLENMNGRQATYAKRKNGIIKKATELSILCDIDIILLMFSPTGKPSLCRGRRSNFEEVIAKFSQLTPQERAKRKLESLEALKKTFKKLDHDVNIQEFLGTSSQTIEDLSNQARLLQTQISETQKRLSQWKEFEKINNVEQLEQMENSLRDSINQIRNRKEHIKNQQLVSLQCNNQFNEMHIPFRMGTEQHLQPLPWIGNGDSPNLVLPDDSSLLLHKDVEGSASSSFGSYASYIGSSSKTDISNSGQENGVLSDLSSTTAPLRLPLNNGHQFPYMPSYNFNLLNDFKFQAAPEMNHHHNQPQENHNLSFHHHVNNGNFEAPRNAYDSNHHHHHGWASTSGPCAVTMFDEHLYAQASLPQVNFGST* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4868 374 CDD MADS 2 54 - -
Amo13g4868 374 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Amo13g4868 374 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Amo13g4868 374 Coils Coil 77 97 - -
Amo13g4868 374 Coils Coil 147 174 - -
Amo13g4868 374 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Amo13g4868 374 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Amo13g4868 374 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo13g4868 374 Coils Coil 114 134 - -
Amo13g4868 374 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo13g4868 374 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo13g4868 374 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo13g4868 374 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 364 - -
Amo13g4868 374 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4868 Amo-Chr13 147486802 147489838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4868 1 367 Type I MADS-box Gene Family AT2G03060 49.616 1.73e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo13g4868 SRF-TF 1.4e-17 No_clan