Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4867 ATGAACTCATGCCCATCTACCTTTATATACTCTTCCTCATCACAGCAAAATACCAGTAATTCAATGGGGATGGTTTATGAAGACATGGCTTCTCTTTCTCTTTGCTCCAACTACACTCTCACCCCCTCCGCAGCCAGCTGGGGCTTCCCCTATGAGGAGCACCCCACTCACAACAGTGATCTTGCGGAGGGTACTACAAAAGGTTCTGATAGCAGCGAAGATAATGGGGTTATTGGAGAAAACAATAACAACAACAACAACCCTAATAATAAAGAGGGAGAGAGTAGTAGCGGACAGTCAAAGCTTTGTGCAAGAGGTCACTGGAGACCAGCAGAAGATTCAAAACTGAAGGAGCTTGTTGCTCTTTATGGCCCTCAGAACTGGAACCTCATAGCTGAAAAGCTAGAAGGAAGATCAGGGAAGAGTTGTAGACTGAGATGGTTCAACCAGCTTGACCCGAGAATAACGAGGAGAGCTTTCAGTGAAGAAGAGGAAGAGAGGCTGATGCAGGCTCATAGGATTTATGGCAACAAATGGGCCATGATTGCAAGGTTGTTCCCTGGAAGAACCGATAACGCTGTTAAAAATCATTGGCATGTTATTATGGCTAGAAAGTATAGGGAACAATCCAGTGCTTATAGGAGAAGAAGGCTCACACAATCAAACAACTTTTACAGAAGAATTGACCATAATAATAATCATAATAATAATAATAATGTATCATCAGAATCATCACCACCACCACACTGTTTTGTGGCTGGCTTCTCATCACTACCGTTTCATGGTGGTGTTCTTGACTTTGGTGCCAATAATAAGCCTTATGCTGCTGTTGCTTCCTCTTCTTCTTCCACCTTCAATTTCTTCTCTGGAGGTAGAGGCAATAATAATAGTAGTGAGATGGTAGGAGGAGAGTATTATTATGGAAGTAATCATCATCATCATTATAATCAGCAGCAAGCACATAATAATAATCATGCTTACTACACTCGTTATCCTAATCATCAGTATATGATGATGATGATGCCATCAGTGCAACAGCATCAAAACAACAACCATAACAAGAATTTTTACAGCTTCTCATCAAATTCAAGCACCACAGTAGCACAGGTGCTAGGCAGTGATCCTTCACTATCATCCATGGCAGAACAACAACACAGAGATCATGAAGAAGCCAGTGACCCCCCAACAACAATCCCAGAGACTCCGTTATTTATTGACTTCCTTGGAGTAGGAGCCACAACATGA 1245 0.4209 MNSCPSTFIYSSSSQQNTSNSMGMVYEDMASLSLCSNYTLTPSAASWGFPYEEHPTHNSDLAEGTTKGSDSSEDNGVIGENNNNNNNPNNKEGESSSGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRITRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLTQSNNFYRRIDHNNNHNNNNNVSSESSPPPHCFVAGFSSLPFHGGVLDFGANNKPYAAVASSSSSTFNFFSGGRGNNNSSEMVGGEYYYGSNHHHHYNQQQAHNNNHAYYTRYPNHQYMMMMMPSVQQHQNNNHNKNFYSFSSNSSTTVAQVLGSDPSLSSMAEQQHRDHEEASDPPTTIPETPLFIDFLGVGATT* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4867 414 PANTHER MYB PROTEIN-RELATED 273 413 - -
Amo13g4867 414 MobiDBLite consensus disorder prediction 61 102 - -
Amo13g4867 414 SUPERFAMILY Homeodomain-like 105 198 IPR009057 -
Amo13g4867 414 ProSiteProfiles Myb-like domain profile. 152 202 IPR001005 -
Amo13g4867 414 Gene3D - 158 240 - -
Amo13g4867 414 PANTHER MYB TRANSCRIPTION FACTOR 273 413 - -
Amo13g4867 414 PANTHER MYB TRANSCRIPTION FACTOR 22 280 - -
Amo13g4867 414 ProSiteProfiles Myb-like domain profile. 105 151 IPR001005 -
Amo13g4867 414 MobiDBLite consensus disorder prediction 375 402 - -
Amo13g4867 414 CDD SANT 108 149 IPR001005 -
Amo13g4867 414 PANTHER MYB PROTEIN-RELATED 22 280 - -
Amo13g4867 414 Pfam Myb-like DNA-binding domain 157 200 IPR001005 -
Amo13g4867 414 Pfam Myb-like DNA-binding domain 105 151 IPR001005 -
Amo13g4867 414 SMART sant 156 204 IPR001005 -
Amo13g4867 414 SMART sant 104 153 IPR001005 -
Amo13g4867 414 MobiDBLite consensus disorder prediction 55 106 - -
Amo13g4867 414 CDD SANT 159 199 IPR001005 -
Amo13g4867 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 206 IPR017930 -
Amo13g4867 414 Gene3D - 105 156 - -
Amo13g4867 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 151 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4867 Amo-Chr13 147458692 147460271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4867 104 217 MYB Transcription Factor Family AT1G69560 90.351 2.67e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g4867 Myb_DNA-binding 1.8e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4867 13 147458692 147460271 Amo13g4867 13 147458692 147460271 ECH