Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4861 ATGAGCGATCATCTGGTGCTGTACGTTGACCGGCTGGTGCGTCCCGTTGTGCCAGTCGAGCCGCTAGCTCAGCACCCGGCTCAGCCATCTCCCGAACCCGAACCGCCGCTAGATGAACCTCCGGCCGCCACGGCGGGGCCCTCCGATTCTGCTCCGAGAGCCGATGACGAGGACGAGGAGGAGGATGAGGAGGCGCCGCTGTTGCAGATGGCGGAGTGCCGCATTTGTCAGGAGGAAGACACCGTCAACAATCTCGAGTCGCCATGTGCTTGCAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGCGATGAGAAAGGAGACATTATTTGTGAGATATGTCACAAGCCCTATGAACCTGGTTATACTGCCCCACCACCACGTGCACATCCTGAAGAAACTACCATTGATATAGGGGGAGGTTGGACAATTTCTGGCACACCTTTGGACTTGCGGGATCCTCGTCTCTTGGCAATTGCTGAGGCGGAACGCCAATTCTTGGAAGCAGAGTATGATGGATATGCTGCTTCTAATGCCAGCGGTGCTGCATTTTGCCGATCAGCTGCTCTTATTTTGATGGCTCTTCTACTCTTGAGGCATGCACTTGCAGTCACAGATGAAGATGCCGATGATGATCCATCCACTTTCTTCTCTCTTTTCTTGCTTCGAGCTGCTGGGTTTCTTTTGCCTTGCTACATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAAAGACAAGAGGCTGCAGCACTGGCGGCAACTCAAGTCGCGTTCGTTTTTCAATCCGGGCAGCGTAGGGGTCTGCAGTTCGCCATTGCACCAGGACCTGCAGTGAGTACACACCAGGAACAAGTGTAG 876 0.5411 MSDHLVLYVDRLVRPVVPVEPLAQHPAQPSPEPEPPLDEPPAATAGPSDSAPRADDEDEEEDEEAPLLQMAECRICQEEDTVNNLESPCACSGSLKYAHRKCVQHWCDEKGDIICEICHKPYEPGYTAPPPRAHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALAVTDEDADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVFQSGQRRGLQFAIAPGPAVSTHQEQV* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4861 291 Pfam RING-variant domain 73 118 IPR011016 GO:0008270
Amo13g4861 291 ProSiteProfiles Zinc finger RING-CH-type profile. 65 125 IPR011016 GO:0008270
Amo13g4861 291 Pfam Protein of unknown function (DUF3675) 124 242 IPR022143 -
Amo13g4861 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 128 IPR013083 -
Amo13g4861 291 SUPERFAMILY RING/U-box 71 123 - -
Amo13g4861 291 SMART ringv_2 72 119 IPR011016 GO:0008270
Amo13g4861 291 CDD RING_CH-C4HC3_MARCH 73 119 - -
Amo13g4861 291 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 279 IPR033275 -
Amo13g4861 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 279 - -
Amo13g4861 291 Coils Coil 161 181 - -
Amo13g4861 291 MobiDBLite consensus disorder prediction 20 66 - -
Amo13g4861 291 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4861 Amo-Chr13 147332778 147335788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4861 72 161 C3H Transcription Factor Family AT5G05830 30.208 4.29e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4861 - - ahf:112734090 479.944