Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4852 ATGGAAAATGTGCAAAGTAGCATGCACTTGGTTCTCTCAACTGATGCAAAGCCAAGGCTCAAATGGACTCCTGAACTTCACCAAAGATTCATTGAGGCAATTAATCAGCTTGGAGGTTCAGAAAAAGCAACACCAAAGAGTCTTATGAGGGTGATGGGGATTCCTGGACTCACTTTGTACCATCTCAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACCCCAACTTGAAATCTGTTCTGGCAACAACAAACATGAAGATTGCAGAGAAATGAAGAACAGTGAAGGTCCTTGTAGCAGCAGGGAAGAAAGTATTGGGACACAGAATGAGATGACTGAAAGCATGCAAATTGCTGAGGCTCTCCAAATGCAAATGGAAGTGCAGAAGAAACTTTATGAGCAAATTGAGGTGCAGAGACATTTGCAGCTTAAGATTGAAGCACAAGGGAAGTACTTGCAATCAGTACTACACAAGGCACAAGAAACACTTGCAGGAATGATCAACAATGGCAGCCCGGGATCTCCTCCGATTTCGGAACTGACAGAAACAAGAGGAGGGATCAGTTGGAGCTGTGGGCAGAGGAAACAGAACAGAGGAACCATGTGTTCACTTGAAATTGAAAGTTCTTTGACATCTTCTGAAAGCTCAATGGATCAAAGGCCTAATAGTACTAACACTACTAATACTGCTTCACTTGAATTGTTGCCACTCTTCAAAGAATCTAAGGAACAGGAAGATGAATCTATTATTGGTAGAAAGAGGAGTTCAAGCTGCTGTGTTGATCAGCCATCAAAGATGAGCAGATCTGAATTAGTGTCAGATATCATTGACTTGAATTCAGAACAAATAGATTTAAATTGCAGTTCAAGCTTCTGGGAACAATGA 891 0.4141 MENVQSSMHLVLSTDAKPRLKWTPELHQRFIEAINQLGGSEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQPQLEICSGNNKHEDCREMKNSEGPCSSREESIGTQNEMTESMQIAEALQMQMEVQKKLYEQIEVQRHLQLKIEAQGKYLQSVLHKAQETLAGMINNGSPGSPPISELTETRGGISWSCGQRKQNRGTMCSLEIESSLTSSESSMDQRPNSTNTTNTASLELLPLFKESKEQEDESIIGRKRSSSCCVDQPSKMSRSELVSDIIDLNSEQIDLNCSSSFWEQ* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4852 296 Pfam Myb-like DNA-binding domain 19 70 IPR001005 -
Amo13g4852 296 Gene3D - 16 74 - -
Amo13g4852 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 74 IPR017930 -
Amo13g4852 296 Coils Coil 120 140 - -
Amo13g4852 296 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 17 72 IPR006447 GO:0003677
Amo13g4852 296 MobiDBLite consensus disorder prediction 209 232 - -
Amo13g4852 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 166 288 IPR044848 GO:0003700
Amo13g4852 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 167 IPR044848 GO:0003700
Amo13g4852 296 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 5 167 - -
Amo13g4852 296 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 166 288 - -
Amo13g4852 296 SUPERFAMILY Homeodomain-like 16 72 IPR009057 -
Amo13g4852 296 Pfam MYB-CC type transfactor, LHEQLE motif 117 164 IPR025756 -
Amo13g4852 296 MobiDBLite consensus disorder prediction 245 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4852 Amo-Chr13 147161602 147163183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4852 1 276 G2-like Transcription Factor Family AT1G69580 47.910 7.87e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo13g4852 Myb_DNA-binding 4.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4852 - - gmx:100805252 323.553