Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4848 ATGGCGGAGTGCCGCATTTGTCAGGAGGAAGACACCGTCAACAATCTCGAGTCGCCATGTGCTTGCAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGCGATGAGAAAGGAGACATTATTTGTGAGATATGTCACAAGCCCTATGAACCTGGTTATACTGCCCCACCACCTCGTGCACATCCTGAAGAAACTACCATTGATATAGGGGGAGGTTGGACAATTTCTGGCACACCTTTGGACTTGCGGGATCCTCGTCTCTTGGCAATTGCTGAGGCGGAACGCCAATTCTTGGAAGCAGAGTATGATGGATATGCTGCTTCTAATGCCAGTGGTGCTGCATTTTGCCGTTCAGCTGCTCTTATTTTGATGGCTCTTCTACTCTTGAGGCATGCACTTTCAGTCACAGATGAAGATGCCGATGATGATCCATCCACTTTCTTCTCTCTTTTCTTGCTTCGAGCTGCTGGGTTTCTTTTGCCTTGCTACATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAAAGACAAGAGGCTGCAGCACTGGCAGCAACTCAAGTCGCGTTCGTTTTTCAATCCGGGCAGCGTAGGGGTCTGCAGTTCGCCATTGCACCAGGACCTGCAGTGAGTACACACCAGGAACAAGTGTAG 669 0.4993 MAECRICQEEDTVNNLESPCACSGSLKYAHRKCVQHWCDEKGDIICEICHKPYEPGYTAPPPRAHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALSVTDEDADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVFQSGQRRGLQFAIAPGPAVSTHQEQV* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4848 222 SUPERFAMILY RING/U-box 3 54 - -
Amo13g4848 222 SMART ringv_2 3 50 IPR011016 GO:0008270
Amo13g4848 222 Pfam Protein of unknown function (DUF3675) 55 173 IPR022143 -
Amo13g4848 222 Pfam RING-variant domain 4 49 IPR011016 GO:0008270
Amo13g4848 222 Coils Coil 92 112 - -
Amo13g4848 222 ProSiteProfiles Zinc finger RING-CH-type profile. 1 56 IPR011016 GO:0008270
Amo13g4848 222 CDD RING_CH-C4HC3_MARCH 4 50 - -
Amo13g4848 222 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 210 IPR033275 -
Amo13g4848 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 210 - -
Amo13g4848 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 59 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4848 Amo-Chr13 147082479 147085405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4848 3 53 C3H Transcription Factor Family AT2G22120 40.741 5.77e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4848 - - ahf:112734090 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4848 13 147082479 147085405 Amo13g4848 13 147082479 147085405 ECH