Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4823 ATGAGTGAGAAAACGATCATGGAGCCTGACCACCATCAAAATGGGATCCGCACCAGACCTAATTTTCCACTCCAACTCTTAGACAATAAGAAAGATGATCTTCAGCAGCCGCCGCCATCAGAGGATGGACCCGCCGCTGCTGCCAAGAAGCTGCCGCCAAAGCGAGCTTCCACAAAAGACAGGCACACCAAGGTCGACGGTCGCGGCCGACGCATCCGTATGCCGGCTGCAGCCGCTGCCAGGGTGTTCCAGCTGACGCGAGAGCTCGGCCACAAGTCTGACGGGGAGACCATCGAGTGGCTCCTCCAACAGGCTGAGCCCTCCGTCATCGCCGCCACCGGAACCGGTACTATCCCTGCAAATTTCACTTCCCTCAACATCACGCTTAGAAGCTCAGGATCCACCATCTCTTCCCCCTCTCACTACTTCAGAGGCGCCACCGCCACCGCTACACCGTACCTTAGCCACGCAGCCAGCTTCTCCGCCGCTAGGAGCCGCAGCGAATGGGTGAGGAACGTGGCGGTGGAAGATTATTCTAGAAGAGTCATGTTCTCCGGCAGTGACAATAGTAATAATAATAACAACAACTCTGCTGTCTTGAATTTCAACAACGCTGTTAATGATATTATGCAAAGCAAGCAAGAGGCTCGGGAAGAGCCCTGTAGCGGTGACGGTGGCGGCGGAGGAGATGCTTTGGGGAGGAAGAGAAGGCAAGAGGAGGTGTTCTCACAGCACCAGGGTACTCAGATGATGGGTAGCTACTTGTTACAGTCGAGTTCAGGGTCAATTCCGGCGACTCATGCTTCTATTCCGGCGACTTTTTGGATGATGGGCGGCGGTGGAGTTGGTGGTGGCAGTGGTAATAATGGCGGTGACCCAATTTGGGCAATTCCAACGGTTGGTAACAATAGTAGCATGTATAAAGGGGCTATGTCTGGTGGCAGCGGCAACGGTGCCGGCGGCATTCATTTCATGAATTTTGCTTCTCCAATGGCTCTATTGCAAGCTCAACAACTAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGCAGTGCAGTGCTGAGTGAAAGTAACCTGGGAATGCTTGCAGCTCTTAATGCATACAGGCCTATTATGGCTAACGGCAGCGGCGGCCAACATTCACCCCATGGAGATGGAGGAGATCAAGAAAGTCAACCCTGA 1179 0.5428 MSEKTIMEPDHHQNGIRTRPNFPLQLLDNKKDDLQQPPPSEDGPAAAAKKLPPKRASTKDRHTKVDGRGRRIRMPAAAAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNITLRSSGSTISSPSHYFRGATATATPYLSHAASFSAARSRSEWVRNVAVEDYSRRVMFSGSDNSNNNNNNSAVLNFNNAVNDIMQSKQEAREEPCSGDGGGGGDALGRKRRQEEVFSQHQGTQMMGSYLLQSSSGSIPATHASIPATFWMMGGGGVGGGSGNNGGDPIWAIPTVGNNSSMYKGAMSGGSGNGAGGIHFMNFASPMALLQAQQLGGGGGGGGGGSAVLSESNLGMLAALNAYRPIMANGSGGQHSPHGDGGDQESQP* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4823 392 Pfam TCP family transcription factor 57 204 IPR017887 -
Amo13g4823 392 MobiDBLite consensus disorder prediction 1 15 - -
Amo13g4823 392 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 46 389 - -
Amo13g4823 392 MobiDBLite consensus disorder prediction 213 246 - -
Amo13g4823 392 ProSiteProfiles TCP domain profile. 58 112 IPR017887 -
Amo13g4823 392 MobiDBLite consensus disorder prediction 1 66 - -
Amo13g4823 392 MobiDBLite consensus disorder prediction 372 392 - -
Amo13g4823 392 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 46 389 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4823 Amo-Chr13 146637626 146639449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4823 41 338 TCP Transcription Factor Family AT3G47620 45.946 2.82e-57 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo13g4823 TCP 9.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4823 - - aip:107633962 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4823 13 146637626 146639449 Amo13g4823 13 146637626 146639449 ECH