Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4808 GATCATCATTTTAACATATTGGAGTCTAATGGGGATAATAATGAAGAAATCGGTGGCAATAAGGATCCAAAGATTGAATCCACTACTGAGGGGGGAATGGGAAAATTGGAAGTATTATTGAGAAATGGTGCAAATGATGAAGATTCATCATCATTAGTGCAAAAGGAGTACTTGTTTGACATTATCCTTCAACAACAAAAGCAAGAAGCTACCACCAAAGAAGGCATCAATAATAATAATGAAGATAGTGATGAAGAACTTGTGTCACTCTCTCTAGGAGTCTCATCATCAGCTTCCAATAATAGAGAGGAAAAACTACTCACCGAGATGTGGCCACCGAGTAAAGTTCTGAAGACAACAAAAAATAATGGCGAAGGAAATGAAGCATCTCATCATCATCACCATAATACTCGCCTCAAGAAGACTAGGGTTTCTATAAGAGCCAGATGTGATACACAAACGATGAATGATGGATGCCAATGGAGAAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCTCGTTCATACTACCGATGCACTGTCTCTTCATCTTGTCCCGTAAGAAAACAGGTTCAAAGATGTGCTCAAGACATGTCAATCCTGATTACAACCTATGAAGGAACTCACAACCATCCACTTCCTTCTTCAGCCACTCCAATGGCGTCTGCAACTTCAGCCGCCGCTTCCGTTCTTCAATCTTCCTCCTTGTCCTCCTCCTCGTCACAACAAGGCCTTGTACCCAATTCAGAAACAACAACCATTATCAACCCTAATAATAATACTACCCTAATAAGACCACAACAATTCTACTTGTTCAACTCTTCCATGATCTCAAATAATAACTTTCACCCCACAATAACTCTTGACCTCATTACTAAACCTCCAACTTCATCATCATCTTCCATACCAAAGTATTCACCAACAAATCTTGATTTTTCCTCAACTACTACCACTTTCTCTCCATTGCAGTATAGCACTCAAGACTCATCATCGTCTCGTTATTATTGGAACCTTAATAATAATAAGAATGGAAAGCAACCACTGATTCAATATCATCAAGGGAATTATTATCCCTACCAACAAAATTGCATGCCCATTATTTTTCAACAACCTTTACATGCAGATTGTTATGCATCCTCTGCTCTTAATAATAACCAACAAGGAAACATCACATTCTCATTGTTAACCTCACAACCGTCTAAAGGTTCATATGCTTCGCCGCCCTCTAAGAAAAGTTACCAGTTCTTGGAGAAAAGGAAGTGA 1269 0.3885 DHHFNILESNGDNNEEIGGNKDPKIESTTEGGMGKLEVLLRNGANDEDSSSLVQKEYLFDIILQQQKQEATTKEGINNNNEDSDEELVSLSLGVSSSASNNREEKLLTEMWPPSKVLKTTKNNGEGNEASHHHHHNTRLKKTRVSIRARCDTQTMNDGCQWRKYGQKIAKGNPCPRSYYRCTVSSSCPVRKQVQRCAQDMSILITTYEGTHNHPLPSSATPMASATSAAASVLQSSSLSSSSSQQGLVPNSETTTIINPNNNTTLIRPQQFYLFNSSMISNNNFHPTITLDLITKPPTSSSSSIPKYSPTNLDFSSTTTTFSPLQYSTQDSSSSRYYWNLNNNKNGKQPLIQYHQGNYYPYQQNCMPIIFQQPLHADCYASSALNNNQQGNITFSLLTSQPSKGSYASPPSKKSYQFLEKRK* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4808 422 ProSiteProfiles WRKY domain profile. 150 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g4808 422 MobiDBLite consensus disorder prediction 1 30 - -
Amo13g4808 422 PANTHER WRKY TRANSCRIPTION FACTOR 72B 100 355 - -
Amo13g4808 422 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 100 355 IPR044810 GO:0003700
Amo13g4808 422 Pfam WRKY DNA -binding domain 156 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g4808 422 MobiDBLite consensus disorder prediction 239 261 - -
Amo13g4808 422 MobiDBLite consensus disorder prediction 401 422 - -
Amo13g4808 422 MobiDBLite consensus disorder prediction 118 143 - -
Amo13g4808 422 SMART WRKY_cls 155 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g4808 422 MobiDBLite consensus disorder prediction 1 23 - -
Amo13g4808 422 SUPERFAMILY WRKY DNA-binding domain 148 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo13g4808 422 Gene3D WRKY domain 140 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4808 Amo-Chr13 146306774 146312019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4808 49 292 WRKY Transcription Factor Family AT5G15130 47.410 1.70e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo13g4808 WRKY 1.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4808 - - adu:107481098 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4808 13 146306774 146312019 Amo13g4808 13 146306774 146312019 ECH