Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4803 ATGGAGCTTGCATCTGTGAAGAGTGAATTCAACCCAAGATGTAATAGGTTACACGTTATGGTGGATGGCAGCGAGGCTAATGCTTCTAAGGGCATCAAAAGGCGACGAAGAGATTCGTCTTTGCCTCTGCCTCTAACGGTGTTAGGGGGCAATGAACAACAAGGTGAACAGCCGGAAGCCCAACAGACACCACAGAGTGGCCAATCGACCCCCAGCACCGTGAAGAGAAGCTCAAGGTTCAGAGGAGTTAGCAGACACAGATGGACTGGAAGGTATGAAGCACATCTATGGGATAAAGGGACATGGAATCCAACTCAGAAAAAGAAAGGAAAGCAAGTGTATTTGGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTTAAGTATTGGGGAACATCAACGTTCACCAATTTTCCAGTATCAGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACCAAAGAAGAATACCTTGCTTCATTGAGAAGAAGAAGCAGTGGATTTTCTAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATTGGAAGAGTGTTCGGCAACAAGTACCTTTACCTTGGAACTTACAGTACACAAGAAGAGGCAGCTCGCGCATATGATATTGCTGCAATTGAATACAGAGGCATAAATGCTGTGACAAACTTTGACTTGAGCACTTACATCAGATGGCTAAGACCAGGAGGAGTACACTCTACCACCTCTCAAGATCAAAAGCCGAGCACAGACCCTCAGATATTTACAACCTCTAACCCCATCCTAGCCACAGGAGCCACCGAGCTATCAAACTTCAACTTCCATCCAGTCCCTGCAAGCGAATTGGACATCACCAAGAAGAAAGAGTTTTCCAAGTTTGCGGCACCTTTAAGTCCATGCTATAAATCACCTTCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCCTCAATGTTTAGAGAACTGATGCAGAGAAACCTGAATTCTGCAGATGAAGAAGCTGAAGAAGTTGAATTGAAATATCCACAAGAGGGCAGTGATGGGATTGGAGGGATTCTTAATAAAAATGACACTAACAGTATATCTTACTTTGGTTCTTCTTCCAATATCAACAGATTACCTAACTTAGTGTCTAGAGAAAGCAGCAAAATGCCAATGTATCACAGAACTGTTATGCCATCGCTGTGGAATGGTGCTTTCAACATTTCTGACTGA 1260 0.4317 MELASVKSEFNPRCNRLHVMVDGSEANASKGIKRRRRDSSLPLPLTVLGGNEQQGEQPEAQQTPQSGQSTPSTVKRSSRFRGVSRHRWTGRYEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGGVHSTTSQDQKPSTDPQIFTTSNPILATGATELSNFNFHPVPASELDITKKKEFSKFAAPLSPCYKSPSSSPTALGLLLKSSMFRELMQRNLNSADEEAEEVELKYPQEGSDGIGGILNKNDTNSISYFGSSSNINRLPNLVSRESSKMPMYHRTVMPSLWNGAFNISD* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4803 419 MobiDBLite consensus disorder prediction 46 78 - -
Amo13g4803 419 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 410 - -
Amo13g4803 419 Coils Coil 335 355 - -
Amo13g4803 419 ProSiteProfiles AP2/ERF domain profile. 79 145 IPR001471 GO:0003700|GO:0006355
Amo13g4803 419 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 410 - -
Amo13g4803 419 Gene3D AP2/ERF domain 180 241 IPR036955 GO:0003700|GO:0006355
Amo13g4803 419 Gene3D AP2/ERF domain 78 147 IPR036955 GO:0003700|GO:0006355
Amo13g4803 419 SUPERFAMILY DNA-binding domain 180 241 IPR016177 GO:0003677
Amo13g4803 419 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Amo13g4803 419 PRINTS Ethylene responsive element binding protein signature 221 241 IPR001471 GO:0003700|GO:0006355
Amo13g4803 419 SUPERFAMILY DNA-binding domain 78 147 IPR016177 GO:0003677
Amo13g4803 419 MobiDBLite consensus disorder prediction 22 82 - -
Amo13g4803 419 Pfam AP2 domain 180 231 IPR001471 GO:0003700|GO:0006355
Amo13g4803 419 Pfam AP2 domain 78 137 IPR001471 GO:0003700|GO:0006355
Amo13g4803 419 CDD AP2 180 241 IPR001471 GO:0003700|GO:0006355
Amo13g4803 419 ProSiteProfiles AP2/ERF domain profile. 181 239 IPR001471 GO:0003700|GO:0006355
Amo13g4803 419 SMART rav1_2 181 245 IPR001471 GO:0003700|GO:0006355
Amo13g4803 419 SMART rav1_2 79 151 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4803 Amo-Chr13 146275328 146277596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4803 59 243 AP2-EREBP Transcription Factor Family AT5G57390 67.027 1.05e-84 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Amo13g4803 AP2 7.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4803 - - adu:107481246 813.142