Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4802 ATGTTTGTGGACAGGGACATTCTTGGAAAGAATGGAGGAAGAAGGATGTTGAAAGGAAAGAACAAAGGAGCTCCATGTGTGGCGAGCAACCCCATTGACAGGTGCTGGAGGTGTGACCCAAACTGGGCTAATAACCGCCAAAAACTTGCAGATTGTGTTCAGGGATTCGGAAGAAACACCATTGGAGGAAAAGGAGGAAAATTCTACGTGGTCAACGACTCTTCAGATGGTGACTTGCTGTCTCCGAAACCAGGTACTATCCGGCATGCAGTGACAAGAACTGAACCCTTGTGGATCATCTTCTCCCGAAGCATGGTGATCAAGCTCCAGCAAGAGCTCATCATGGCCAGCAACAAGACCATTGATGGCAGGGGATTCGATGTCCAAATTGCAAACGGTGCTGGCATCACCGTGCAGTTCATCAAGAACGTCATTATCCATGGCATCAAGGTCTACAACACGGTGGTCAAGACAGGTGGCATGATTAGGGACTCCGAAACTCATTACGGATTTCGGACACAGAGTGATGGTGATGGTATCTCCATCTTTGGCGCAAGCAACATCTGGATCGACCATGTTTCCATGAGAAACTGCTCCGATGGATTGATTGATGCCATTATGGGCTCCACCGCCATTACCATCTCCAACGGCCATTACACTGACCACAATGAGGTGATGCTGTTTGGAGCGAGTGACAGCTACAGCGGCGACAAGATCATGCAAATCACCTTGGCATTCAACCACTACGGCAAGAGGTGTGTTCAGAGAATGCCAAGGGCCAGACATGGTTTTGTCCATGTTGTCAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGCAGCAAGAACCCTACCATCATCAGTGAGGGTAACAGGTTCATTGCCCCTGAAAACCGCTTTGCCAAAGAGATAACGAAGAGAGAATACGCAGAAGAAAGCATATGGAAGAACTGGCAATGGAGATCAATCAATGATGAATACTTGAATGGAGCATTCTTCGTTCAATCAGGGGCTGAATTGAAGAACAGACCATTCTCAAGGGAGGACATGATCACAGCCAAGCCAGGAACATATGTTGGAAGGCTTACACGCTTTGCGGGTGTTCTTCCATGCAAAATTGGCCAACCATGCTAG 1140 0.4789 MFVDRDILGKNGGRRMLKGKNKGAPCVASNPIDRCWRCDPNWANNRQKLADCVQGFGRNTIGGKGGKFYVVNDSSDGDLLSPKPGTIRHAVTRTEPLWIIFSRSMVIKLQQELIMASNKTIDGRGFDVQIANGAGITVQFIKNVIIHGIKVYNTVVKTGGMIRDSETHYGFRTQSDGDGISIFGASNIWIDHVSMRNCSDGLIDAIMGSTAITISNGHYTDHNEVMLFGASDSYSGDKIMQITLAFNHYGKRCVQRMPRARHGFVHVVNNDYTHWEMYAIGGSKNPTIISEGNRFIAPENRFAKEITKREYAEESIWKNWQWRSINDEYLNGAFFVQSGAELKNRPFSREDMITAKPGTYVGRLTRFAGVLPCKIGQPC* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4802 379 Gene3D - 29 372 IPR012334 -
Amo13g4802 379 PANTHER PECTATE LYASE 18-RELATED 9 379 IPR045032 GO:0030570
Amo13g4802 379 PANTHER PECTATE LYASE 9 379 - -
Amo13g4802 379 SUPERFAMILY Pectin lyase-like 30 370 IPR011050 -
Amo13g4802 379 SMART amb_all 104 301 IPR002022 -
Amo13g4802 379 PRINTS Pollen allergen Amb family signature 76 101 IPR018082 -
Amo13g4802 379 PRINTS Pollen allergen Amb family signature 52 69 IPR018082 -
Amo13g4802 379 PRINTS Pollen allergen Amb family signature 320 344 IPR018082 -
Amo13g4802 379 PRINTS Pollen allergen Amb family signature 350 373 IPR018082 -
Amo13g4802 379 PRINTS Pollen allergen Amb family signature 176 197 IPR018082 -
Amo13g4802 379 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Amo13g4802 379 PRINTS Pollen allergen Amb family signature 112 128 IPR018082 -
Amo13g4802 379 PRINTS Pollen allergen Amb family signature 256 275 IPR018082 -
Amo13g4802 379 Pfam Pectate lyase 112 295 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4802 Amo-Chr13 146257634 146273428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4802 5 379 Polysaccharide Lyase AT1G14420 64.211 4.14e-178 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4802 K01728 - gmx:100798579 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4802 13 146257634 146273428 Amo13g4802 13 146257634 146273428 ECH
Amo13g4802 13 146257634 146273428 Amo11g2177 11 119743220 119745671 ECH
Amo13g4802 13 146257634 146273428 Amo20g3300 20 140887564 140891630 ECH