Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4791 ATGGAACCAAAACTGTTAGCACCATCATTGTTTATATGTTTTTTGTTGATAGAAAAATTGGGATTCGAGGTTCCAACTCTGGTGCAAGCTCAAGCCATTCCTATTATTCTCGCTGGCCGTCATGCACTTATTAATGCTGCCACAGGCACAGGGAAGACAGTTGCCTACTTAGCTCCACTTATTCATCACTTGCAGAATTATGATACTTGCATACAACGCTCTGATGGAATATTTGCGTTGGTTCTTGTACCGACGCGTGAGCTATGTCTGCAGGTTTATGAAATTCTTCAAAAGCTATTGCATCGTTTCCATTGGATTGTTCCCGGGTATGTTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCTAGGCTACGCAAAGGCATATCAATTCTTATAGCAACACCTGGGCGTCTTTTAGATCATTTGAAGAATACATCATCATTCTTGTACACAAAATTGCGCTGGATAATTTTTGATGAAGCTGATAGCATTGATCCTTCAGAGTTTGATGAAGAAGACGAAGTCAAGTATTCCAGTAAAATACCAATAGCTGTAGATTATAAAATCCCCACACAGTTAATTCAGAGATACGTGAAAGTGCCTTGTGGTTCTCGGCTTGCTGTTCTTCTTTCAATTCTAAAGCATCTTTTTGAAAGAGACACTTCACAAAAGGTTGTGGTATTCTTTTCGACATGTGATGCGGTAGACTTTCACCATTCGCTACTAAGTGAGTTCCACTTCTCGACTGATCCTCAAACAAAAGAAAGGGTCATACAGATGTTTCTTGGATGCCAAACTTTTCGATTGCATGGTAATATGGAACATGAAGACCGGAGATCTACTTTTCAGGCTTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTTTCTGCTAGAGGCCTGGATTTTCCTAAGGTTCGATGCATCATACAGTATGATTCTCCTGGGGAAGCTACTGAATATGTGCACAGGTATAATTATTTACAGGACTTGGAGAAACATGGTGTTTCACTAGCAGAGTATCCTCTTCTCAAAGTGTTGGATAATTTTACATTACACGGACATAACAAACAAGTAAAGAAGTCTATTTTCATCGACTTGCATCCTTGGGTCCTTTGTCTCCAGAAGGCACTTGAATCATTCATCATTTCCAAGCCCAAGATGGATGAACTTGCTAGGAAGGGATTTTGCTCTTGGGTCCGTGCTTACACAGCACATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTGGCCAAAAGCTTTGCTTTGAAACAACAACCATCCGTAGTTGGACAATCCTTCCAAAAGCAAAATAAGAAGAGAAAGAGATTTGAGAAAAAAAATGGGCTATCGAAAAAGAGAAAAGTTGCTAGAGTGACTTAG 1410 0.3986 MEPKLLAPSLFICFLLIEKLGFEVPTLVQAQAIPIILAGRHALINAATGTGKTVAYLAPLIHHLQNYDTCIQRSDGIFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFLYTKLRWIIFDEADSIDPSEFDEEDEVKYSSKIPIAVDYKIPTQLIQRYVKVPCGSRLAVLLSILKHLFERDTSQKVVVFFSTCDAVDFHHSLLSEFHFSTDPQTKERVIQMFLGCQTFRLHGNMEHEDRRSTFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRYNYLQDLEKHGVSLAEYPLLKVLDNFTLHGHNKQVKKSIFIDLHPWVLCLQKALESFIISKPKMDELARKGFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSVVGQSFQKQNKKRKRFEKKNGLSKKRKVARVT* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4791 469 Pfam Domain of unknown function (DUF4217) 377 438 IPR025313 -
Amo13g4791 469 Gene3D - 202 328 IPR027417 -
Amo13g4791 469 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 33 211 IPR014001 -
Amo13g4791 469 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 362 467 - -
Amo13g4791 469 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 25 164 - -
Amo13g4791 469 MobiDBLite consensus disorder prediction 441 469 - -
Amo13g4791 469 PANTHER RNA HELICASE 182 340 - -
Amo13g4791 469 MobiDBLite consensus disorder prediction 445 469 - -
Amo13g4791 469 Pfam DEAD/DEAH box helicase 27 170 IPR011545 GO:0003676|GO:0005524
Amo13g4791 469 SMART ultradead3 21 260 IPR014001 -
Amo13g4791 469 PANTHER RNA HELICASE 362 467 - -
Amo13g4791 469 PANTHER RNA HELICASE 25 164 - -
Amo13g4791 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 326 IPR027417 -
Amo13g4791 469 Gene3D - 9 181 IPR027417 -
Amo13g4791 469 CDD SF2_C_DEAD 193 326 - -
Amo13g4791 469 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 212 377 IPR001650 -
Amo13g4791 469 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 182 340 - -
Amo13g4791 469 SMART helicmild6 252 328 IPR001650 -
Amo13g4791 469 SMART DUF4217_3 375 440 IPR025313 -
Amo13g4791 469 Pfam Helicase conserved C-terminal domain 211 326 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4791 Amo-Chr13 146094565 146100785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4791 21 340 Eukaryotic Initiation Factors Gene Family AT3G19760 26.879 2.25e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4791 K14806 - gmx:100805157 478.404