Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4783 ATGGGTGCAGGGGACTACTACAAGGTTCTGAAGGTGAATCGTCACGCCACAGAAGAGGAGCTTAAGAAAGCATACAAGAGGCTTGCAATGAAGTGGCATCCAGATAGGAACCACCATCAAGAAGTGAAGAACAAGGAAGAAGCTGAAGCAAAGTTCAAGCAGATATCTGAGGCCTATGATGTCTTGAGTGACCCCAAAAAGCGCCAGATCTATGATTTCTATGGCCACTACCCTCTCAATTCCATGAAGGTTAACAAAAAGGAACAAGACTGTGATGGTAGAAATAATAATGTGAAGGAGGAGAAAGCAGGGGTGGTGGTTGAGACCAAACTTGTGTGCACCCTTGAGGAGCTTTACAAAGGTTGTAGGAAGAAGTTGAAGATCTCAAGAAATGTTGTTGATGAACTCGGCAAGTTGAAGTGTGTGGAAGAAACCTTGAAGATAGACATTAAACCAGGTTGGAAAAAAGGAACAAAGATAACATTCCCTGGAAAAGGAAACCAAGAACAAGGAGGGTCTCAACCTTCTGATCTAGTCTTTGTAGTGGATGAGAAACCACATGCTGTGTTCAAGAGAGATGGAAATGACTTGGTGATCACACAGAAGATCTTGCTTGTGGAGGCACTCTCAGGGAAGACACTCAACTTGACAACCTTGGACGGAAGAGAAATCGCCATTGAAGTGACCGATGTTGTGAAACCGAGGCATGTTATGGTGGTCCCAAATGAAGGGATGCCAATTTCTAAAGAACCAGGGAAGAAAGGATCCTTGAGAATCAAGTTTGATGTTATGTTCCCTTCAAGGCTTTCCACACATCAGAAGCATGAGCTTAAGAAGATTATGAGAAAGGATTATAAACTGTCATCATGA 870 0.431 MGAGDYYKVLKVNRHATEEELKKAYKRLAMKWHPDRNHHQEVKNKEEAEAKFKQISEAYDVLSDPKKRQIYDFYGHYPLNSMKVNKKEQDCDGRNNNVKEEKAGVVVETKLVCTLEELYKGCRKKLKISRNVVDELGKLKCVEETLKIDIKPGWKKGTKITFPGKGNQEQGGSQPSDLVFVVDEKPHAVFKRDGNDLVITQKILLVEALSGKTLNLTTLDGREIAIEVTDVVKPRHVMVVPNEGMPISKEPGKKGSLRIKFDVMFPSRLSTHQKHELKKIMRKDYKLSS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4783 289 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 283 - -
Amo13g4783 289 Pfam DnaJ C terminal domain 107 266 IPR002939 -
Amo13g4783 289 Gene3D - 187 267 - -
Amo13g4783 289 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 275 IPR008971 GO:0006457|GO:0051082
Amo13g4783 289 SUPERFAMILY Chaperone J-domain 4 80 IPR036869 -
Amo13g4783 289 CDD DnaJ 5 64 IPR001623 -
Amo13g4783 289 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
Amo13g4783 289 CDD DnaJ_C 107 269 - -
Amo13g4783 289 PRINTS DnaJ domain signature 7 25 IPR001623 -
Amo13g4783 289 PRINTS DnaJ domain signature 25 40 IPR001623 -
Amo13g4783 289 PRINTS DnaJ domain signature 47 67 IPR001623 -
Amo13g4783 289 PRINTS DnaJ domain signature 67 86 IPR001623 -
Amo13g4783 289 Pfam DnaJ domain 5 72 IPR001623 -
Amo13g4783 289 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Amo13g4783 289 Gene3D - 105 185 - -
Amo13g4783 289 SMART dnaj_3 4 67 IPR001623 -
Amo13g4783 289 Gene3D DnaJ domain 1 97 IPR036869 -
Amo13g4783 289 SUPERFAMILY HSP40/DnaJ peptide-binding domain 108 187 IPR008971 GO:0006457|GO:0051082
Amo13g4783 289 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4783 Amo-Chr13 145952622 145955407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4783 6 72 C2H2 Transcription Factor Family AT1G74250 38.806 1.86e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4783 K09510 - gmx:100786068 447.588