Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4780 ATGTTAGTACTATTACTACGCACTGCGGCATCTGGTGCTGTCACATATCCATGCAAATGCAAGGCACCACCACTAAGAACAAGAACCCGAACCCTGCTGCATCTTTTCCTTCCAATTCATCCCAACACCAACATCAATTCCACCATCCTTTGTTCTTCATCCTCACTCAATGATGACTCATTTTCTAACCCTAAACCAACAACCAAGTTGGGTTACACTCCTCCAGAGGAGCTCTTTGGCCTCGACGTTGAACTCAACCCAAGCAAAACTAACTCTCAGACACAGGAGCCAAGGTCTTGGTTTGGTCCAAATGGACAGTATATCAAAGAGCTTCCTTGTCCGAGTTGCCGGGGAAGGGGTTATACTCCGTGTACAGAATGTGGAATAGAAAGATCAAGATCAGATTGTCCAAAATGTAACGGAAAGGGTATAGTGACTTGCCACCAGTGCTCTGGAGAATGTGTTATATGGGAAGAATCAATTGATGAGAAACCATGGGAGAGAGCCCGTTCAATTTCACCACTTAAAGTGAAGGAAGATGATGAAGTAGACAAGTTAGACATAAAGTTAGATGTGAAGAAAAAATCCAAGCGTGCTTACCAGTCACCATCTCCTGAAGTGGGATTAAAGATTAGTCGTTCATTGAAAAGTCTTAATGCGAAAACTGGTCTATTTAGCAACCGAATGAAGATTATCCACCAGGATCCCAAGCTTCAGGCGCAAAGAGTGGCTGCTATTAAGAGAGCCAAGGGAACTATTGCAGCAAGAAAGCATACTTCCAAGACTATGAAAGCTTTCTTTAGTGATCCTATAAACCGTCAGAAAAGGAGCATGGCCATGAAGGGAGTGAAATTCTACTGTCAAAACTGTGGACGCGAAGGGCATAGGAGACACTACTGTCCGGAACTCAAGGATTCTTTGGTTGACCGGCGATTCACATGCAAACTATGTGGGGAAAAGGGCCACAACAGAAGAACATGCAACAAGTTAAAGACAAGCCACGGCAATGGTAGAGTTATAAAACACAATAGGTGTAAAATATGTCGCCAATATGGCCATAACCAGAGGACATGCCCTCAAGTTGTTCCCAGCAAAAGAAGGGACACTCTCTTGAATAAAGCATACAAGTGTAGGTTGTGCCACAAAGAGGGACACAATATTAGGACATGTCCTAGCAGAGTTGTTACTGAAAATCCTCAAGATCAGTAG 1209 0.4359 MLVLLLRTAASGAVTYPCKCKAPPLRTRTRTLLHLFLPIHPNTNINSTILCSSSSLNDDSFSNPKPTTKLGYTPPEELFGLDVELNPSKTNSQTQEPRSWFGPNGQYIKELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGIVTCHQCSGECVIWEESIDEKPWERARSISPLKVKEDDEVDKLDIKLDVKKKSKRAYQSPSPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLQAQRVAAIKRAKGTIAARKHTSKTMKAFFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDSLVDRRFTCKLCGEKGHNRRTCNKLKTSHGNGRVIKHNRCKICRQYGHNQRTCPQVVPSKRRDTLLNKAYKCRLCHKEGHNIRTCPSRVVTENPQDQ* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4780 402 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 42 394 - -
Amo13g4780 402 SUPERFAMILY Retrovirus zinc finger-like domains 284 330 IPR036875 GO:0003676|GO:0008270
Amo13g4780 402 ProSiteProfiles Zinc finger CCHC-type profile. 287 302 IPR001878 GO:0003676|GO:0008270
Amo13g4780 402 SUPERFAMILY Retrovirus zinc finger-like domains 337 393 IPR036875 GO:0003676|GO:0008270
Amo13g4780 402 Gene3D - 340 400 - -
Amo13g4780 402 Gene3D - 283 331 - -
Amo13g4780 402 SMART c2hcfinal6 344 360 IPR001878 GO:0003676|GO:0008270
Amo13g4780 402 SMART c2hcfinal6 376 392 IPR001878 GO:0003676|GO:0008270
Amo13g4780 402 SMART c2hcfinal6 313 329 IPR001878 GO:0003676|GO:0008270
Amo13g4780 402 SMART c2hcfinal6 286 302 IPR001878 GO:0003676|GO:0008270
Amo13g4780 402 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 42 394 - -
Amo13g4780 402 Pfam Zinc knuckle 375 391 IPR025829 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4780 Amo-Chr13 145823322 145826988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4780 23 398 C2H2 Transcription Factor Family AT5G20220 58.673 6.58e-157 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4780 - - gmx:100800156 592.808