Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4778 ATGTTGCAGTTGAAGCTACACTCAATCCCTTCATCACTTTCTTCTTCTTCTTCTTCTTCTTCCAATCCTCTCTGCCTTCAGAACCATTCCTTTCTCTCTCCAAAGTTCCTTCCTTTTTCTTCTGTTACTCCAAAGCCCTTCTCCATCACATGCCGCCACTCCGACCTCTTCGACCAGAAAACCTTCTCCTCCTCCGCACCTTCTTCTTCTTCTTCTTCAGGTGGAGCTTTGCCACCTAGGGTTTATGTTGGTCACTCCATTTACAAAGGGAAGGCTGCACTTTCCATCACTCCTAGGCCTCCGGAATTTGCACCGCTCGATTCAGGGGCATTCAAAATATCTAGGGAAGGTTATGTTCTGCTTCAGTTTGCACCCGCAATTGCTTCGCGCCAGTATGATTGGACTAGAAAGCAGGTGTTCTCTTTATCAGTGGGTGAAATGGGAACTGTGATCAGCCTTGGCGCAAGGGAGTCTTGTGAATTCTTCCATGATCCTATGAAGGGCAAAAGTGATGAAGGTAAAGTTAGAAAAGTTTTGAAGGTGGATCCTCTTCCGGATGGTTCTGGTCACATGTTTAACCTCAGTGTTCAAAACAGGATTGTGAATGTCGATGAAAACATCTACATCCCTGTTTCAAGAGCAGAGTTAACAGTTTTGAGCTCAATTTTCAATTTTATTATGCCATACCTTCTTGGTTGGCACACCTTTGCGAACTCAATAAAGCCAGAGGATTCGAGAGGAGCGAATAATGCAAACCCTACATATGGAGGAGACTATGAATGGAATAGATTGTGA 795 0.444 MLQLKLHSIPSSLSSSSSSSSNPLCLQNHSFLSPKFLPFSSVTPKPFSITCRHSDLFDQKTFSSSAPSSSSSSGGALPPRVYVGHSIYKGKAALSITPRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDWTRKQVFSLSVGEMGTVISLGARESCEFFHDPMKGKSDEGKVRKVLKVDPLPDGSGHMFNLSVQNRIVNVDENIYIPVSRAELTVLSSIFNFIMPYLLGWHTFANSIKPEDSRGANNANPTYGGDYEWNRL* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4778 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 2 263 - -
Amo13g4778 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 2 263 IPR013742 GO:0003697|GO:0006355|GO:0006952
Amo13g4778 264 SUPERFAMILY ssDNA-binding transcriptional regulator domain 79 263 IPR009044 GO:0003677|GO:0006355
Amo13g4778 264 Pfam Whirly transcription factor 87 221 IPR013742 GO:0003697|GO:0006355|GO:0006952
Amo13g4778 264 Gene3D Transcriptional Coactivator Pc4; Chain A 74 251 IPR009044 GO:0003677|GO:0006355
Amo13g4778 264 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4778 Amo-Chr13 145813198 145815837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4778 4 263 Whirly Transcription Factor Family AT1G14410 62.452 2.48e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Amo13g4778 Whirly 2.8e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4778 - - gmx:100789252 367.851