Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4776 GATCATCATTTTAACATATTGGAGTCTAATGGGGATAATAATGAAGAAATCGGTGGCAATAAGGATACAAAGATCGAATCCACTACTGAGGGGGGAATGGGAAAATTGGAAGTATTATTGAGAAATGGTGCAAATGACGAAGATTCATCATCATCATCATCATCATTAGTGCAAAAGGAGTACTTGTTTGACATTATCCTTCAACAACAAAAGCACGAAGCTACCACCAAAGAAGGAATCAATAATAATGAAGATAGTGATGATGAAGAACTTGTGTCACTCTCTCTAGGAGTCTCATCATCAGAAAAACTACTCACCGAGATGTGGCCACCGAGTAAAGTTCTCAAGACAACAAAAAATAATGGCGAAGGAAATGAAGCATCTCATCATCATTACCATAATACTCGCCTCAAGAAGGCTAGGGTTTCTATAAGAGCCAGATGTGATACACAAACGATGAATGATGGATGCCAATGGAGAAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCTCGTTCATACTACCGATGCACTGTCTCTTCATCTTGTCCCGTAAGAAAACAGGTTCAAAGATGTGCTCAAGACATGTCAATCCTGATTACAACCTATGAAGGAACTCACAACCATCCACTTCCTTCTTCAGCCACTCCAATGGCGTCTGCAACTTCAGCCGCCGCTTCCGTTCTTCGATCCTCGTCCTTGTCCTCCTCCTCATCGCAACAAGGCATTGTACCCAATTCAGACACAACCACCATTGTCAACCCTAATAATAATAATAATAATACCCTAATAAGACCACAACAATTCTACTTGTTCAACTCTTCCATGATCTCAACCTCCAATAATAACTTTCACCCCACAATAACTCTTGACCTCATTACTAAACCTCCAACTTCATCATCATCTTCCATACCAAAATATTCACCAACAAATCTTGATTTTTCCTCAACTACTACCACTTTCTCTCCATTGCAGTATAGCACTCAACACTCATCATCGTCTCGTTATTATTGGAACCTTAATAAGAATGGAAAGCAACCATTGATTCAATATCATCAAGGCCATTATCCCTACCAACAAAATTGCATGCCCATTATTTTTCAACAACCTTTACATGCAGATTGTTATGCTTCCTCTGCTCTTAATAATAACCAACAAGGAAACATCACAAAATCATTGTTAACCTCACAACCGTCTAAAGGTTCATATGCTTCGCCGCCCTCTAAGAAAAGTTACCAGTTCTTGGAGAAAAGGAAGTGA 1266 0.3926 DHHFNILESNGDNNEEIGGNKDTKIESTTEGGMGKLEVLLRNGANDEDSSSSSSSLVQKEYLFDIILQQQKHEATTKEGINNNEDSDDEELVSLSLGVSSSEKLLTEMWPPSKVLKTTKNNGEGNEASHHHYHNTRLKKARVSIRARCDTQTMNDGCQWRKYGQKIAKGNPCPRSYYRCTVSSSCPVRKQVQRCAQDMSILITTYEGTHNHPLPSSATPMASATSAAASVLRSSSLSSSSSQQGIVPNSDTTTIVNPNNNNNNTLIRPQQFYLFNSSMISTSNNNFHPTITLDLITKPPTSSSSSIPKYSPTNLDFSSTTTTFSPLQYSTQHSSSSRYYWNLNKNGKQPLIQYHQGHYPYQQNCMPIIFQQPLHADCYASSALNNNQQGNITKSLLTSQPSKGSYASPPSKKSYQFLEKRK* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4776 421 Pfam WRKY DNA -binding domain 154 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g4776 421 MobiDBLite consensus disorder prediction 397 421 - -
Amo13g4776 421 MobiDBLite consensus disorder prediction 397 411 - -
Amo13g4776 421 ProSiteProfiles WRKY domain profile. 148 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g4776 421 MobiDBLite consensus disorder prediction 235 262 - -
Amo13g4776 421 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 103 359 IPR044810 GO:0003700
Amo13g4776 421 MobiDBLite consensus disorder prediction 1 32 - -
Amo13g4776 421 SMART WRKY_cls 153 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g4776 421 MobiDBLite consensus disorder prediction 1 23 - -
Amo13g4776 421 SUPERFAMILY WRKY DNA-binding domain 146 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo13g4776 421 Gene3D WRKY domain 138 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo13g4776 421 PANTHER WRKY TRANSCRIPTION FACTOR 72B 103 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4776 Amo-Chr13 145803001 145808442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4776 53 294 WRKY Transcription Factor Family AT5G15130 48.207 2.08e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo13g4776 WRKY 1.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4776 - - adu:107481098 695.271