Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4770 ATGCCAGACTCCTGTGAAGAAAAATCTGAACTTCCTTCCAAGTCAAAGCCACAAGAAGAACATGGTTTTCCCATGGATTTTGATATATACCTTGAAAGTTCATCATGGCCCATGGATCACACCCCTTCTGCTTCCAACCCCATGTCTCCTTTCATCATAACAACCTCCTCTGAACAACCTTTTTCTCCTCTCTGGGCTTTCTCTGATGTTGAAGATGATCACAGGCATGTCAGGGTTGTTGCAGGTGATAATACAAATACAGCAATTGAAACTGAAAATCCGGTTGAAAATGATGACAACAAAAAAATAGTGTCACCCCCCTTTGTGCCTCTTCCACCTATAAAAATTCCAGATGGTTATTGTCTAATTAAGGAAAGAATGACACAAGCACTTCGCCACTTCAAACAGTTGACTGAACAGAATTTTCTGGCTCAGGTTTGGGCACCTGTGAGGAATGGCAACCGTTATGCACTCACAACTTCAGGTCAACCATTTGTTCTTGATCCACATAGTAATGGACTACATCAGTACAGAACAGTTTCCCTGATGTATATGTTTCCTGTTGATGGGGAGAATGATGAAATCTTGGGACTTCCCGGTCGAGTTTTTCAGCAGAAATTGCCAGAATGGACTCCCAATGTTCAGTATTATACAAGTAGAGAATACTCTCGGAGAAACCATGCACAACATTACAATGTCCGCGGAACGTTGGCTTTGCCCGTGTTTGAATCACCAGGGCAGTCATGTGTTGGTGTATTGGAGCTGATAATGACTTCAGAGAAGGTTAATTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCCCTTGAGGCAGTGAATTTGAGGAGTTCAGAAATTCTGGAACATCCATTTGCTCAGATTTGCAACGAAGGTCGCCAGAATGCGTTAGCAGAGATTTTGGAGATATTGACAGTGGTATGTGAAACTCATAATTTACCTCTTGCACAAACATGGGTTCCCTGTAGGCATCGGAGTGTTTTGGCAAACGGCGGTGGTCTTAAGAAAAGCTGTTCTAGTTTTGATGGCCACTGCATGGGGCGAGTTTGCATGTCTGCCTCCGATGTAGCATTCTATGTCATTGATGCTCATACATGGGGTTTCCATGATGCTTGCGCTGAGCATCACTTACAACAAGGTCAAGGTGTTGCTGGCAGGGCATTTTTATCCCATAACATGAGCTTCTGTGGAAACATAACTCAATTCTGCAAAACTGATTATCCTCTAGTTCATTATGCTCTCATGTTTGGGTTAACCAGCTGCTTCGCAATCTGTTTACAAAGTTCTCATACCGGAAGTGATGATTATGTGTTGGAGTTTTTTCTGCCACCTAGCATCACAAACTTTTATGAACAAAAGGATTTGTTGGGATCTATATTGGCAACAATGAAGCAGAATTTCCAGAGTCTTAAGGTTGCTGCCGGTGTGGAACTCGAGGAGGGTTGTACAATTGAAGTTGTAGAACCAATAAATGAAAGAATTCATTTGAGCCTTGAATCTGTTCCAGTTGCTCAATCTGCTAAATCACCACAACCTACGCTCAATGCCTCGCTAAATAAGGATGATGGAGTGCCACAAGGTCCGCTAGAACAGCAAATGCCGGCATGGTTGGATGATATAAATGATGGAGGGAATCTTGGTGATAATGCAGGTGGAAGCACGAATCTGATGACTTCCTTAGAGGCTAAAATCAAGAAGAAACCCTCTGAAAGAAAACGTGGAAAAGCCGAGAAAATGATTAGTCTTGAAGTTTTGCAACGTTACTTCAGTGGAAGTCTGAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCGACGACTATGAAGCGTATCTGTAGGCAGCATGGAATATCTCGTTGGCCGTCAAGAAAGATCAACAAGGTTAACCGTTCCTTGTCGAAGCTCAAGTGTGTCATTGAATCAGTCCAAGGTGCAGAAGGAGCATTTGCTTTGAATTCTGTAAATAAAGACCCACTTCCCATTGCTGCCGGTTCCTTTACCGAGCCTTGTACTTCAAAAATGTTCAACCGGAATGCCTCGTTGAGCATCCAGCCATCCAAGACTCAGATCAATGAAAATGATTTGGATACTTCGAGAGTGTCAGAGACAAACCGACAGGTGAGGATGCAAGATCAATTCCTTGAAGGAGAACAGAGTCCTGAGAAGGTGATCCACGAAGAAGGTTGGTCTACTCAAGAAGTTGGCACTAAAGATCCAGAGAAGTTTAGAAATCTTAGTGGTTCAAGTGAAGATAGCGCAAATCCCCATTCTCACGATTCATGTCATGGTAGTCCCCCAAATGAAATTTCACCTGCAAATATATTTAGACCATTCAACAAAGAGAAATCTGTTCCGTTAAGAGTTTCCGCAGAGTCAACAATGCAGCCAACTAATGCACTGAATTATGCAAATGCATATACTGCGCTTAACGTCGAGAGAACAGAACCTCAAGAACCATTTGGCAGAATGCTACTTGAGGGTGTTGGTAGTTCTAAAGACTTGAGAAATTTGTGCCCTTTGGAGGATCAAGCTTTAGAAGCTTGTGGGGTTAATCCACCATGTCATGACTTGGCTCCCAAGCAATGCATGATGGATATTACCCTTAATAGCAACAACACTATGATACCTTTTGCAACTAAGAAAGAGATGAAGAGTGTGACAATTAAGGCAACATATAAAGAAGATATCATAAGGTTTAGGGTGTCTTTGAACTGTGGCATTGTTGAACTGCAGGAAGAAATTTCAAAGAGATTGAAACTAGAAATTGGAGCATTTGATATAAAGTATCTGGACGATGATAATGAATGGGTTTTGATATCATGTGATGCAGATCTTCAGGAGTGCATGGATGTTTTAACTTCATCAGGAAGCAACATGATAAGGCTTGTGGTGCATGACACAGTTTCCATTCTTGGAAGCTCATGTGAGAGCTCTGGGAACTGA 2955 0.423 MPDSCEEKSELPSKSKPQEEHGFPMDFDIYLESSSWPMDHTPSASNPMSPFIITTSSEQPFSPLWAFSDVEDDHRHVRVVAGDNTNTAIETENPVENDDNKKIVSPPFVPLPPIKIPDGYCLIKERMTQALRHFKQLTEQNFLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTVSLMYMFPVDGENDEILGLPGRVFQQKLPEWTPNVQYYTSREYSRRNHAQHYNVRGTLALPVFESPGQSCVGVLELIMTSEKVNYAPEVDKVCKALEAVNLRSSEILEHPFAQICNEGRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLANGGGLKKSCSSFDGHCMGRVCMSASDVAFYVIDAHTWGFHDACAEHHLQQGQGVAGRAFLSHNMSFCGNITQFCKTDYPLVHYALMFGLTSCFAICLQSSHTGSDDYVLEFFLPPSITNFYEQKDLLGSILATMKQNFQSLKVAAGVELEEGCTIEVVEPINERIHLSLESVPVAQSAKSPQPTLNASLNKDDGVPQGPLEQQMPAWLDDINDGGNLGDNAGGSTNLMTSLEAKIKKKPSERKRGKAEKMISLEVLQRYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKCVIESVQGAEGAFALNSVNKDPLPIAAGSFTEPCTSKMFNRNASLSIQPSKTQINENDLDTSRVSETNRQVRMQDQFLEGEQSPEKVIHEEGWSTQEVGTKDPEKFRNLSGSSEDSANPHSHDSCHGSPPNEISPANIFRPFNKEKSVPLRVSAESTMQPTNALNYANAYTALNVERTEPQEPFGRMLLEGVGSSKDLRNLCPLEDQALEACGVNPPCHDLAPKQCMMDITLNSNNTMIPFATKKEMKSVTIKATYKEDIIRFRVSLNCGIVELQEEISKRLKLEIGAFDIKYLDDDNEWVLISCDADLQECMDVLTSSGSNMIRLVVHDTVSILGSSCESSGN* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4770 984 SMART PB1_new 889 971 IPR000270 GO:0005515
Amo13g4770 984 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 983 - -
Amo13g4770 984 CDD PB1_NLP 890 970 IPR034891 -
Amo13g4770 984 ProSiteProfiles RWP-RK domain profile. 571 652 IPR003035 -
Amo13g4770 984 MobiDBLite consensus disorder prediction 687 777 - -
Amo13g4770 984 SUPERFAMILY CAD & PB1 domains 887 974 - -
Amo13g4770 984 ProSiteProfiles PB1 domain profile. 889 971 IPR000270 GO:0005515
Amo13g4770 984 PANTHER PROTEIN NLP8 3 983 IPR045012 GO:0003700
Amo13g4770 984 MobiDBLite consensus disorder prediction 687 717 - -
Amo13g4770 984 MobiDBLite consensus disorder prediction 722 749 - -
Amo13g4770 984 MobiDBLite consensus disorder prediction 1 24 - -
Amo13g4770 984 MobiDBLite consensus disorder prediction 750 771 - -
Amo13g4770 984 Pfam RWP-RK domain 585 632 IPR003035 -
Amo13g4770 984 Pfam PB1 domain 890 970 IPR000270 GO:0005515
Amo13g4770 984 Gene3D - 886 970 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4770 Amo-Chr13 145660886 145665359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4770 851 982 NLP Transcription Factor Family AT1G64530 45.098 1.11e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo13g4770 PB1 4.3e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4770 - - gmx:100780901 1385.93