Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4736 ATGGATCCGGGTGCGATGATGAACGAGGGCTCGTTTGGGAATGGGGGAGGCAATACGGTGCCGTTTAGCTTGGCGGAGATCTGGCCGTTTCCGCAGGCCGTCAACGCTGCTGGAGGCGGCGCCTTGGGGCTCAGGAGGCCGCAGTTTGGCTTGGGACAGTTTGGGGATTTCATTGCCGGTCCCAACCGGGAACCTGGACCGGTTGCTTCAGAACAGAAGGCGGCCAGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGTAGTAGGAAGAGGCGTGAATCAGAGGAGGAATCCCCTAAGGGTGTTTCCACCAGCAATGTTGCACCTAATGCCGTGAATGATGGGGATGGAAAACGGCTTAAAGGAGGAGGAGGAGCGTCTGGGAGCAGGAATGAAAGCCGTGACGCGAAGGTTGAAGGAGCAGAAGCCAGTTCAGGAAAGCCTGCGGACCAAAATAATCAGACACCACCACCTGACCCTCCTAGGCAAGATTACATCCACGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCTGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGAAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCCCTTCAGCGTCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCAAGACTGAACACTGGCATTGAAGCTTTTCCTCCTAAAGATTTTGGTCAGCAAACATTTGATCCGGCGAGCTTGCCATTTGGTTCTCAGGCTACTAGAGACTATAGCAGAGGTTCTTCCCCAGAGTGGTTACATATGCAGGTAGGAGGTGCTTTCGAAAGAACAACGTAG 885 0.5164 MDPGAMMNEGSFGNGGGNTVPFSLAEIWPFPQAVNAAGGGALGLRRPQFGLGQFGDFIAGPNREPGPVASEQKAASGGGGGGGGGGSRKRRESEEESPKGVSTSNVAPNAVNDGDGKRLKGGGGASGSRNESRDAKVEGAEASSGKPADQNNQTPPPDPPRQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDFGQQTFDPASLPFGSQATRDYSRGSSPEWLHMQVGGAFERTT* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4736 294 Gene3D - 170 246 IPR036638 GO:0046983
Amo13g4736 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 240 IPR036638 GO:0046983
Amo13g4736 294 Pfam Helix-loop-helix DNA-binding domain 177 224 IPR011598 GO:0046983
Amo13g4736 294 Coils Coil 220 240 - -
Amo13g4736 294 SMART finulus 179 229 IPR011598 GO:0046983
Amo13g4736 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 223 IPR011598 GO:0046983
Amo13g4736 294 MobiDBLite consensus disorder prediction 44 163 - -
Amo13g4736 294 CDD bHLH_AtBPE_like 163 248 - -
Amo13g4736 294 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 294 IPR024097 GO:0006355
Amo13g4736 294 PANTHER BNAC05G07950D PROTEIN 1 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4736 Amo-Chr13 145288364 145291221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4736 1 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 55.294 8.58e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo13g4736 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4736 - - gmx:100784478 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4736 13 145288364 145291221 Amo13g4736 13 145288364 145291221 ECH