Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4730 ATGAAGAGGTCCAGAGATGATGTTTACATGAGTTCTCAGCTCAAACGACCTATGGTATCTTCTAGAGGAGAACCCTCCGGGCAACCCCAGGTTACGATTGGTAATGCTGGTCAGAAACTGACCACAGATGATGCCTTACAATACCTGAAGGCCGTGAAGGATATGTTTCATGATAAGAAGGAAAAGTATGATGACTTTTTAGAAGTAATGAAAGATTTCAAGGCCCAAAGAATTGATACAGCGGGTGTCATAGCAAGAGTGAAGGAGCTATTTAAAGGGCATAGAAATCTAATTTTAGGGTTTAATACCTTCTTGCCTAAGGGATATGAAATTACACTTCCGTTGGAGGATGAACAACCTCAGCAGAAGAAGCCTGTTGAATTTGTTGAAGCTATAAATTTTGTGGGCAAGATCAAGAGTCGGTTTCAAGGCGATGACCGTGTGTATAAGTCGTTTCTTGATATATTGAATATGTACAGAAAGGAAACCAAGACTATCTCTGAGGTTTACTTAGAGGTTGCTGCACTTTTCCGTGACCATGAAGATCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATAATTCAGTATCAGCTTCAACTCATTATACTTCTGCCCGAAATTCTATACTTCGTGATAAGAGCTCTGCAATGCCAACTATTAGACCAATGCATGTTGACAAGAAAGAAAGGACCACGGCTTCTCATGGTGAACGTGATCTCAGCGTTGATCATCCTGATCAAGAACTTGATAAAAGTTTGGTGAGGGCTGATAAGGACCAGAAAAGGCGTGCTGAAAAGGAAAAGGACCGTCGAGAAGAGAGAGATAGGAGAGAAAGGGAAAGGGATGATAGAGATTATGATGTTGATTGTAATAGAGACAGTTTATCCCACAAGCGAAAATCTGGTCGTAGGACTGATGACTCTGGTGCTGAACCATTCCATGATGAAGATGAAAATTTTGACCTGCGCCCTATGTCATCTACTTGTGAAGATAAAAGCTCTTTGAAAAGTATGTGCAGTCAAGTCGTTGCTTTCCTTGAAAAAGTCAAGGAGAAATTACGAACTCCTGAGGTTTATCAAGAATTTTTGAAGTGTCTACATATATACAGCAGGGAAATAATTACCCGACAAGAATTGCAGTCATTGGTGGGTGATTTGCTGGGGAAATTTCCAGATCTTATGGAGGGATTTAATGAATTTTTGGCACAATGCGAGAAGAATGAAGGATTTCTTGCTGGCGTCATGAACAAAAAGTCCTTGCGGAATGAAGGACATGGATTGAAAGCATTGAAGGTAGAGGAGAGGGATAGAGATCGAGACCGTGATAAGGTTGAAGGGGTGAAAGAAAGGGATAGAGAGTGCCGAGAAAGGGACAAATCCACTGCAGCAGCTGCAAATAAAGATGTTTTCGTTCCTAAGATGTCTCCATATGCCACCAAGGATAAGTATTTGGCAAAACCTATAAATGAGCTAGACCTTTCTAATTGTGAACAATGCACTCCCAGTTACCGTCTTCTTCCAAAAAATTACCCAATACAAATACCTAGCCAGAGAACAGAACTTGGTGCAGAAGTATTGAATGACCACTGGGTGTCTGTCACTTCAGGAAGTGAAGATTATTCCTTTAAACACATGCGAAAAAATCAGTTTGAAGATATTCTGTTTAGATGTGAAGATGACAGGTATGAACTTGATATGCTGATCGAGTCTGTAAATGTAGCAATCAAGCGAGTAGAAGAGCTCTTGGAAAAGATTAATACTAATATTATAAAGGGAGACAGTCCAATTCGAATTGAGGAACACTTCACAGCTTCAAATCTTAGATTGATTGAACGATTATATGGTGACCATGGGCTTGATGCAATGGATTGGCTAAGAAAGGATGCATCTCGCTTTTTGCCTGTCATATTAAACCGCTTGAGGCAGAAACATGTAGAATGTGTAAGGATGAGTGTTGCTTGTAAACCAGAGTGGGCTAAAGTACATGCTGCGAATCATCATAAATCACTTGATCACCGTAGCTTCTACTTTAAGCAGCAGGATAAGAAAAGCTTGAGTAATAAAGCCTTACTGACAGAAATAAAAGAAATTAGTGAGAAGAAATGGAAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCTCTTCTTCCAAACTTGGAATTTGAGTATCCTGATCCAGAGATCCATGAAGATTTGTATCAGCTAATAAAATACTCCTGTGGAGAACTTTGTACAACTGAACAGATGGATGAAGTTTTAAAGATTTGGACTACTTTTTTAGAACCCATGCTTGGTGTTCCTTCTCGACCCCAGAGTTGTGAAGATACAGATGATATTGTTAAGGCTAAGAGCAATTCTTCTAGAAGTGGCACTTCAAATGATTCTAATGGTAATGATAGTCATGGTTTTGGTGCGACTCCTAATAATTTAAACACTAACGAAAACAGGGATGAGAGTATTCCATTAGCACAGTCAAATTCTTTTAAAGAATGGTTAGCAAATGGGGATAGTGGAGTTAAAGAGAGTAGTCATCTTGATTCAGACCGCACTTCATACAAGATTGAAACTTTGGGCAGTAATACACAGCAGGGTAAAATACATATGATTGCATCCATCCCTGATGAAGTATCAAGAATCAATAAACAAGACCATCCGATTGAAAAGTTGGCGAGTGCTAATATCTCAGTGGCCTCTGGAATGGAGCAAAATGGAAGAACTAACATAGATAACACATCAGGACTTACTTCACCTCCATCTGGTCCTGGTAATGTTTCTGGCGAGGGAGGGCTTGGTTTACCTCCATCAAAGCTCGCTGATTCTACAAAACCTGTTACATCTTCAAATGGGGTTATTACTGAAGGCACCAAAGTTCACCGACCCAAAGATGAATCAGTTGGACACTTCAAAAGTGATAGAGAAGAGGGAGAATTATCTCCCAATGGAGACTTTGAAGAGGACAACTTTGCAGTTTATGGAGAAGCTGGTTTGGAGGGAGTGATTGAAGGGAAGGATAGTAGTACAAGCCGACAATACCAAAGTAGACATGGAGAAGAAGTTTGTGGTGAAGCCGGAGGAAGAAATGACCTTGATGATGAAGGTGAGGAAAGTCCTCATAGGTCGTCAGAGGACAGTGACCATGCTTTGGAAAATGGTGATGTTTCTGGTAGTGAGTCTGCTGATGGTGACGACTTTACAAGAGAAGAAAAAGAGTGTGGGGATCAAGAACACAATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGAAATGGCTGATGGCAATGATGTTGAGGGAGATAGTTCCTTGTTACCAATTTCAGAACACTTTCTTCTCACGGCAAAGCCTCTGGCAAAATATGTCATGCCAGTGTTGCACGAAAAAGAACATTATAGAGTCTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGATTACATCAGAAATTGTATGAGAGGATTCGGTCGGCAAAGGTTAACTCGTCCTCTGATGAAAGGAAATGGGGGACTACAAATGATACTAGCTCTACTGAACAATATGGCAGGTTCTTGAATTCTCTTTATGACTTCCTGGACGGTTCTTCTGATAATACGAAGTTTGAGGATGACTGTCGAGCTATTGTTGGAACTCAGTCATATGTTTTGTTCACAATAGACAAGCTAATATATAAACTTGTTAAACATCTTCAAGCTGTTGCAGATGATGAGATGGATAACAAGCTTCTTCAATTATATGCACATGAGAAATCAAGAAAACCTGAAAGATTTTTTGATACAGTCTATCATGACAATGCTCGCATTCTTCTTCACGATGACAATATATATCGAGTTGAATGTTCACCTGCACCTACTCGTTTGTCTATTCAACTGATGGACTACGGTCGTGATAAGCCCGAAGTGACTGCTGTGTCAATTGACCCAAAATTTTCAGCATATCTGCACAATGACTTCCTAGCTGTTGTCCCTGACCAAAATAAGAAGTCTGGAATTTTCTTGAATAGGAATAAACGCAAATATGCCACTGTCGATGAATTTACCAGCCAGGCCATGGATGGAGTCGACGTTTTCAATGGCTTGGAGTGCAAGATAGCTTGCAGTTCGTCTAAGGTAGTTTGTAGCATTTTTGGTCGTGCATCATCGGCAAAGGCGCCGGACGGGACCGAAATGACAGATCTCCCTCCAAGAGCAAAGGATGTATACTTTGTGATATTTAATTTCGTTGCAATGCTCACAGCAACCAAATAA 4248 0.4032 MKRSRDDVYMSSQLKRPMVSSRGEPSGQPQVTIGNAGQKLTTDDALQYLKAVKDMFHDKKEKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRNLILGFNTFLPKGYEITLPLEDEQPQQKKPVEFVEAINFVGKIKSRFQGDDRVYKSFLDILNMYRKETKTISEVYLEVAALFRDHEDLLEEFTHFLPDNSVSASTHYTSARNSILRDKSSAMPTIRPMHVDKKERTTASHGERDLSVDHPDQELDKSLVRADKDQKRRAEKEKDRREERDRRERERDDRDYDVDCNRDSLSHKRKSGRRTDDSGAEPFHDEDENFDLRPMSSTCEDKSSLKSMCSQVVAFLEKVKEKLRTPEVYQEFLKCLHIYSREIITRQELQSLVGDLLGKFPDLMEGFNEFLAQCEKNEGFLAGVMNKKSLRNEGHGLKALKVEERDRDRDRDKVEGVKERDRECRERDKSTAAAANKDVFVPKMSPYATKDKYLAKPINELDLSNCEQCTPSYRLLPKNYPIQIPSQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQFEDILFRCEDDRYELDMLIESVNVAIKRVEELLEKINTNIIKGDSPIRIEEHFTASNLRLIERLYGDHGLDAMDWLRKDASRFLPVILNRLRQKHVECVRMSVACKPEWAKVHAANHHKSLDHRSFYFKQQDKKSLSNKALLTEIKEISEKKWKDDVLLAIAAGNRRPLLPNLEFEYPDPEIHEDLYQLIKYSCGELCTTEQMDEVLKIWTTFLEPMLGVPSRPQSCEDTDDIVKAKSNSSRSGTSNDSNGNDSHGFGATPNNLNTNENRDESIPLAQSNSFKEWLANGDSGVKESSHLDSDRTSYKIETLGSNTQQGKIHMIASIPDEVSRINKQDHPIEKLASANISVASGMEQNGRTNIDNTSGLTSPPSGPGNVSGEGGLGLPPSKLADSTKPVTSSNGVITEGTKVHRPKDESVGHFKSDREEGELSPNGDFEEDNFAVYGEAGLEGVIEGKDSSTSRQYQSRHGEEVCGEAGGRNDLDDEGEESPHRSSEDSDHALENGDVSGSESADGDDFTREEKECGDQEHNNKAESEGEAEEMADGNDVEGDSSLLPISEHFLLTAKPLAKYVMPVLHEKEHYRVFYGNDSFYVLFRLHQKLYERIRSAKVNSSSDERKWGTTNDTSSTEQYGRFLNSLYDFLDGSSDNTKFEDDCRAIVGTQSYVLFTIDKLIYKLVKHLQAVADDEMDNKLLQLYAHEKSRKPERFFDTVYHDNARILLHDDNIYRVECSPAPTRLSIQLMDYGRDKPEVTAVSIDPKFSAYLHNDFLAVVPDQNKKSGIFLNRNKRKYATVDEFTSQAMDGVDVFNGLECKIACSSSKVVCSIFGRASSAKAPDGTEMTDLPPRAKDVYFVIFNFVAMLTATK* 1416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4730 1415 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Amo13g4730 1415 MobiDBLite consensus disorder prediction 905 988 - -
Amo13g4730 1415 MobiDBLite consensus disorder prediction 942 956 - -
Amo13g4730 1415 SUPERFAMILY PAH2 domain 36 107 IPR036600 GO:0006355
Amo13g4730 1415 MobiDBLite consensus disorder prediction 14 36 - -
Amo13g4730 1415 Gene3D Paired amphipathic helix 333 406 IPR036600 GO:0006355
Amo13g4730 1415 MobiDBLite consensus disorder prediction 434 458 - -
Amo13g4730 1415 Gene3D Paired amphipathic helix 122 195 IPR036600 GO:0006355
Amo13g4730 1415 Pfam Paired amphipathic helix repeat 148 191 IPR003822 GO:0006355
Amo13g4730 1415 Pfam Paired amphipathic helix repeat 357 401 IPR003822 GO:0006355
Amo13g4730 1415 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Amo13g4730 1415 SUPERFAMILY PAH2 domain 121 193 IPR036600 GO:0006355
Amo13g4730 1415 MobiDBLite consensus disorder prediction 1005 1101 - -
Amo13g4730 1415 MobiDBLite consensus disorder prediction 1 36 - -
Amo13g4730 1415 MobiDBLite consensus disorder prediction 207 331 - -
Amo13g4730 1415 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Amo13g4730 1415 MobiDBLite consensus disorder prediction 222 325 - -
Amo13g4730 1415 Coils Coil 568 588 - -
Amo13g4730 1415 MobiDBLite consensus disorder prediction 1011 1053 - -
Amo13g4730 1415 MobiDBLite consensus disorder prediction 770 820 - -
Amo13g4730 1415 ProSiteProfiles PAH domain profile. 335 404 IPR003822 GO:0006355
Amo13g4730 1415 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1372 - -
Amo13g4730 1415 Pfam C-terminal domain of Sin3a protein 1135 1372 IPR031693 -
Amo13g4730 1415 MobiDBLite consensus disorder prediction 905 925 - -
Amo13g4730 1415 Coils Coil 254 283 - -
Amo13g4730 1415 PANTHER SIN3B-RELATED 1 1372 IPR039774 GO:0003714
Amo13g4730 1415 MobiDBLite consensus disorder prediction 1062 1089 - -
Amo13g4730 1415 MobiDBLite consensus disorder prediction 786 820 - -
Amo13g4730 1415 Pfam Sin3 family co-repressor 497 588 IPR013194 -
Amo13g4730 1415 MobiDBLite consensus disorder prediction 958 980 - -
Amo13g4730 1415 SUPERFAMILY PAH2 domain 339 404 IPR036600 GO:0006355
Amo13g4730 1415 SMART hdac_interact2seq4b 495 595 IPR013194 -
Amo13g4730 1415 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4730 Amo-Chr13 145166561 145174436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4730 34 120 WRKY Transcription Factor Family AT4G12020 63.218 2.82e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo13g4730 Sin3a_C 9.6e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4730 K11644 - gmx:100781798 1931.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4730 13 145166561 145174436 Amo13g4730 13 145166561 145174436 ECH