Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4713 ATGGCGACGGCACAGGAGGAAGTAGCAGCATCACAAGCGGAGAAGGGGAAGATGAGGTGGTGGGAGCTGGAGGAGGATGACGGCGAGGACCTTGACTTCCTCCTGCCGCCGAAGCAGGTGATAGGTCCTGACGAGAACGGAATCAAGAAGGTCATAGAGTACAAGTTCGACGACGAAGGCAACAAACTCAAGATCACTACCACTACTCGCGTTCGCAAGCTCGCCAACGCCCGCCTCAGTAAGCAGGCCGTCCTCCGCCGACAATGGCAAAAGTTCGGAGACGCCGTTCACGAGGATGTCGGCAGCCGCCTTACCATGGTCTCCACTGAAGAGATCGTCCTTGAGCGCCCCAAGCCCCTAGGTGCGAAATCAGAGGAGCCAAAGGCTACTGGAGACTCACTATCTCAAATCAACAAGGGTGCTGTTCTTATGGTGTGTAGGACTTGTGGGAAGAAGGGTGACCATTGGACCTCGCGGTGTCCTTACAAGGACCTTGTGCAGCCAACAGAGGGATTTGTCGATAGGCCTCCAACTTCAGATGGCCCGACTCCTGCATCTGGTTCGACCAAGGGAGCATATGTGCCTCCTGGTATGAGGGCGGGTGCCGAGAGGAGCGGATCGGATATGAGGCAGCGTAGGAATGATGAGAATTCTGTGAGGGTCACCAATCTCTCGGAGGACACCAGAGAGCCTGATTTGCTGGAGCTGTTCCGCCCTTTTGGCGCTGTGAGCAGAGTATATGTGGCTATTGATCAAAAGACAGGCATGAGCAGGGGGTTTGGCTTTGTTAACTTTGTGAACAGGGAAGATGCACAAAGAGCTATCAACAAACTCAATGGTTATGGGTACGACAATCTCATCCTAAGAGTTGAATGGGCAACCCCAAGGGCAAATTAG 897 0.5385 MATAQEEVAASQAEKGKMRWWELEEDDGEDLDFLLPPKQVIGPDENGIKKVIEYKFDDEGNKLKITTTTRVRKLANARLSKQAVLRRQWQKFGDAVHEDVGSRLTMVSTEEIVLERPKPLGAKSEEPKATGDSLSQINKGAVLMVCRTCGKKGDHWTSRCPYKDLVQPTEGFVDRPPTSDGPTPASGSTKGAYVPPGMRAGAERSGSDMRQRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAN* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4713 298 PIRSF Transl_init_eIF-3_RNA-bind 9 298 IPR017334 GO:0003743|GO:0005737|GO:0005852
Amo13g4713 298 SUPERFAMILY RNA-binding domain, RBD 208 297 IPR035979 GO:0003676
Amo13g4713 298 Gene3D - 181 298 IPR012677 -
Amo13g4713 298 CDD RRM_eIF3G_like 218 293 IPR034240 -
Amo13g4713 298 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 16 298 - -
Amo13g4713 298 Pfam Eukaryotic translation initiation factor 3 subunit G 39 165 IPR024675 -
Amo13g4713 298 SMART rrm1_1 218 291 IPR000504 GO:0003723
Amo13g4713 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 285 IPR000504 GO:0003723
Amo13g4713 298 CDD eIF3G 46 164 IPR024675 -
Amo13g4713 298 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 17 297 IPR017334 GO:0003743|GO:0005737|GO:0005852
Amo13g4713 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
Amo13g4713 298 MobiDBLite consensus disorder prediction 168 218 - -
Amo13g4713 298 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 16 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4713 Amo-Chr13 144969935 144971972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4713 11 296 Eukaryotic Initiation Factors Gene Family AT3G11400 69.182 2.06e-152 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4713 K03248 - gmx:100818725 491.5