Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4650 ATGTCATCAAGTAGAACACTAGTGAGGCATGTGTTTGATGTTCCTGAAGAGATATGTTACGTGCAATGTGGATTGTGTTCATCCATTTTAGTGGTGTGTGTGCCATGCACCAGCATGTCAATGGCGGTTCTCAGTGTCAGATGCGGCCACTGCTCAACCATTCTCTCTGTCAACATGATCAAACCTTCCTTTCTTCCTTCTCTGGTAACCCCTTCCAATCAGCTAAATATTGAGGATGGCAACAAGATTAGCACTTTGAACGCTCATAATAATTATAATGATTGTGAGGAAGCCAATAATAATGTAACTACTCCATTCACAACTGATTCTGCTCCCAATAAACCGCCAGAAAAGAAACAGCGAACACCGTCGGCTTATAACTGTTTCATCAAAGAAGAGATTAAGAGGCTTAAAGCTGAAAACCCTGAAATGGCTCACAAGGAAGCTTTCAGTACTGCTGCAAAAAATTGGGCCAATTTTCCCCCATCTGAGTATAGAAGAGGAGATGATGAAATTGACGAAGAGCGCTCTACCCACACACCCCAACTTGCTAATAATAATAAGGTGAATATTGAAGAAGGTGAAGATCGACGTGGAAGAAAGAATCTAGAGAATTCTATGATAAATGCACCGTTCAAGTGA 642 0.4128 MSSSRTLVRHVFDVPEEICYVQCGLCSSILVVCVPCTSMSMAVLSVRCGHCSTILSVNMIKPSFLPSLVTPSNQLNIEDGNKISTLNAHNNYNDCEEANNNVTTPFTTDSAPNKPPEKKQRTPSAYNCFIKEEIKRLKAENPEMAHKEAFSTAAKNWANFPPSEYRRGDDEIDEERSTHTPQLANNNKVNIEEGEDRRGRKNLENSMINAPFK* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4650 213 MobiDBLite consensus disorder prediction 161 213 - -
Amo13g4650 213 Pfam YABBY protein 15 162 IPR006780 GO:0007275
Amo13g4650 213 SUPERFAMILY HMG-box 108 181 IPR036910 -
Amo13g4650 213 PANTHER PROTEIN YABBY 6-RELATED 1 176 IPR006780 GO:0007275
Amo13g4650 213 MobiDBLite consensus disorder prediction 98 113 - -
Amo13g4650 213 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 119 187 IPR009071 -
Amo13g4650 213 CDD HMGB-UBF_HMG-box 121 164 - -
Amo13g4650 213 MobiDBLite consensus disorder prediction 164 178 - -
Amo13g4650 213 MobiDBLite consensus disorder prediction 98 123 - -
Amo13g4650 213 Gene3D High mobility group box domain 104 188 IPR036910 -
Amo13g4650 213 PANTHER AXIAL REGULATOR YABBY 4 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4650 Amo-Chr13 144034115 144036026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4650 6 168 C2C2-YABBY Transcription Factor Family AT1G23420 49.153 3.18e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Amo13g4650 YABBY 8.3e-52 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4650 K25796 - gmx:100804172 214.157