Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4645 ATGTTGGGGCGCAAAAATGTCTTGGATGAGGCTCGATTTCAGTATCAAACCAATGAAGCAAATCAACTGCAGTTGTTTGGGAATATACAAGCTGGATGCAATATTGACCCTGTTAGTTACGTTGGAAATGAGTATCTCAGCTCCATGTTTCGATCTAATAAACGAAGCAGAGCAGCAGAAGATATATCAAAGCAGCAAAAGCTTCAGATTTCCTTAAATTACAATGTCTGTCAGGACAAAGCTGATCGATTGGCAAATAGTCCAAATCCAAATCAAGTGTCAACAGGATTGAGGCTTTCTTATGATGATGATGAGCGCAATTCTTCTGTTACTTCTGCTAGTGGTAGCATGACTGCCGCATCTTCAATCATATTATCCCTTGGTGACAATTTCAGAACCGAGCTTGATAGGCAGCAAGAAGAGCTGGACCAGTATATTCAGCTACAGAAGGACCAATTGTCAAAAGCAGTGAGAGATATGAAACAAAAACACATGACCAGTGTCTTTAATGCCATTGAGAAAGGTGTTAGCAAGAAGCTAAGGGAAAAAGATGCAGAGATAGAGAACATTAACCAGAAAAACAGGGAACTAGCAGAGAGAATAAAACAAGTATCCATCGAAGCACAGAGCTGGCACTACAAAGCAAAGTATAATGAACAAGTTGTCAATGTATTAAGGAACAATCTCCAGCAAGCAATTACACAAGGAGAGGAACAAGGAAAGGAAGGGTTCGGAGACAGTAGCGAAGTTGACGATGCCACCTCATATATCGATTTGAATAGCTTGATCAGCAATCCAGGTGCACGAATGAAATCTACTTTGAAGGAGCACCAAGGCATAGAGAATCTGATGTGCAGAGCATGCAGGGCGAAGGAGGTTTCCATGTTGTTGATGCCTTGCAGACACTTATGCTTGTGTGACAACTGTGATAGATATATCAATGTTTGTCCTGTATGCCAATTGATGAAAACTCAAAGTGTCCAGGTGTATCTGTCTTAA 999 0.4094 MLGRKNVLDEARFQYQTNEANQLQLFGNIQAGCNIDPVSYVGNEYLSSMFRSNKRSRAAEDISKQQKLQISLNYNVCQDKADRLANSPNPNQVSTGLRLSYDDDERNSSVTSASGSMTAASSIILSLGDNFRTELDRQQEELDQYIQLQKDQLSKAVRDMKQKHMTSVFNAIEKGVSKKLREKDAEIENINQKNRELAERIKQVSIEAQSWHYKAKYNEQVVNVLRNNLQQAITQGEEQGKEGFGDSSEVDDATSYIDLNSLISNPGARMKSTLKEHQGIENLMCRACRAKEVSMLLMPCRHLCLCDNCDRYINVCPVCQLMKTQSVQVYLS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4645 332 Pfam Zinc finger, C3HC4 type (RING finger) 282 320 - -
Amo13g4645 332 ProSiteProfiles Zinc finger RING-type profile. 285 320 IPR001841 -
Amo13g4645 332 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 7 331 IPR017066 -
Amo13g4645 332 Coils Coil 180 207 - -
Amo13g4645 332 MobiDBLite consensus disorder prediction 83 114 - -
Amo13g4645 332 MobiDBLite consensus disorder prediction 83 98 - -
Amo13g4645 332 PANTHER S-RIBONUCLEASE BINDING PROTEIN SBP1-RELATED 7 331 - -
Amo13g4645 332 PIRSF SBP1_RNase_bind 2 332 IPR017066 -
Amo13g4645 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 332 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4645 Amo-Chr13 143905392 143909235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4645 281 330 C3H Transcription Factor Family AT1G73950 40.000 5.97e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4645 K19042 - mnt:21410357 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4645 13 143905392 143909235 Amo13g4645 13 143905392 143909235 ECH