Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4635 ATGGGAAAATTTGCCGGCTATACCCTTGCTGCGGTTTTCTTCTTGGCCTTGGTGGCTGTAACTTTCTTCATGTTCAGGAAGAAGAAATCAAGAGGAGATGTCTATGGTATACCTCGCCATAATCTTCACTTTCACGTTAGACCAGGTGTTGATAGAATTTACTATGGACAGAAGGCTGGCGTTGGAAATGGACCAATATTGTCTCCCAATAGAAGCAACCATGGAAGTGCAAGAAATCCTGGAAGCAGACTTTTAGCACCTTCAGACATAGGGCAACAGGTGAATGCTCCAGTAGCCTTTAGCTATGAAGACATCTTGCAGGTAACCAATTCGTTCTCTGATGAAAACGTCATAGGTGAAGGAGGGTTTGGGCATGTTTACAAAGGGACACTGCCGGACGGAAAGGTGGTTGCGGTTAAGAAGCTAAAGGTTGGCAGCGGCCAGGGGGAAAGGGAATTCAGGGCAGAAGTGGAGATCATCAGCCGTGTCCATCACAGGCATTTGGTATCTTTAGTTGGTTATTGCATATGTGAGGATCAAAGATTGCTCGTCTATGAGTATGTTCCTAATGGGACACTCCATCATCACTTGCATGGAAGTGGAATGCCAGTGTTGACATGGGACAAGAGGTGCAAGATCGCTATTGGTGCTGCAAAGGGTTTGGCATATCTGCATGAGGAATGCAGCCAAAAGATTATTCACAGAGATATTAAATCAGCAAACATACTTTTGGATGATACTTTCGAGGCTCAGGTTGCAGATTTTGGACTTGCAAGGCTAACTGACACTACCAAAAGTCATGTATCAACTAGGGTTATGGGAACCTTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGGAAATTAACTGATAGATCAGATGTTTTCTCATTTGGGGTTGTCCTCCTTGAGCTTCTAACAGGAAGGAAACCAGTTGATGACTCTCAGCCTTTAGGAGATGAGAGTTTGGTTGAATGGGCTCGTCCGCATCTCCTCCATGCAATGGAGACACATGACTATAGTGTGCTAGTAGATCCAAGACTTCAAAATCAATTCGCGGAGGCTGAAATGCTCAGGATGATTGAGGCGGCCGTGGCTTGTGTTCGCCACTCTGCTCCTAAACGGCCTCGAATGGTTCAGGTTGTAAGAGCCTTAGATAGTGGAGCTGAAATATCTGATCTATCTAATGGGGTGAAATATGGTCACAGTACCAACTATGATTCTAACCAGTATGATAAAGACATTAGGATGTTCAGGAGAATGGCCAACGGCAGCTATGGTGGTGACTCTGATTCCGATAAGTACAGTAAAGAAAGCAGTCTCTCAAGAGAAATGTCAACTTGTGGATCCCAAAATGGATCCGGGACAAGTAGTTCTAGCAGCGACTTAGAATCCATAGCACTCACCAAGCATAGTAGAAGTTCTTCGTAG 1431 0.4493 MGKFAGYTLAAVFFLALVAVTFFMFRKKKSRGDVYGIPRHNLHFHVRPGVDRIYYGQKAGVGNGPILSPNRSNHGSARNPGSRLLAPSDIGQQVNAPVAFSYEDILQVTNSFSDENVIGEGGFGHVYKGTLPDGKVVAVKKLKVGSGQGEREFRAEVEIISRVHHRHLVSLVGYCICEDQRLLVYEYVPNGTLHHHLHGSGMPVLTWDKRCKIAIGAAKGLAYLHEECSQKIIHRDIKSANILLDDTFEAQVADFGLARLTDTTKSHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELLTGRKPVDDSQPLGDESLVEWARPHLLHAMETHDYSVLVDPRLQNQFAEAEMLRMIEAAVACVRHSAPKRPRMVQVVRALDSGAEISDLSNGVKYGHSTNYDSNQYDKDIRMFRRMANGSYGGDSDSDKYSKESSLSREMSTCGSQNGSGTSSSSSDLESIALTKHSRSSS* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4635 476 MobiDBLite consensus disorder prediction 441 476 - -
Amo13g4635 476 Gene3D Transferase(Phosphotransferase) domain 1 188 404 - -
Amo13g4635 476 ProSiteProfiles Protein kinase domain profile. 112 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4635 476 SMART serkin_6 112 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4635 476 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 3 450 - -
Amo13g4635 476 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Amo13g4635 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Amo13g4635 476 Pfam Protein tyrosine and serine/threonine kinase 115 385 IPR001245 GO:0004672|GO:0006468
Amo13g4635 476 MobiDBLite consensus disorder prediction 426 476 - -
Amo13g4635 476 SUPERFAMILY Protein kinase-like (PK-like) 90 385 IPR011009 -
Amo13g4635 476 Gene3D Phosphorylase Kinase; domain 1 83 187 - -
Amo13g4635 476 CDD STKc_IRAK 118 386 - -
Amo13g4635 476 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 3 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4635 Amo-Chr13 143814244 143817818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4635 4 441 Trihelix Transcription Factor Family AT1G70460 61.419 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Amo13g4635 PK_Tyr_Ser-Thr 8.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4635 - - lang:109330554 586.26