Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4589 ATGCAAGAATTTAGGGGTAAGTTGCAGAAGGTGATAAAGAAAGCGAATCCAGATATAGATTGGGGGGTTTTCAATAACTATAACAACTACTACTACAACAACAGAAAGGAGGAATCTAAATCAGGCTCCGATGAATTGGCATCGCCTCGGGGGATGTTCGAAGCTATGTCGACTGCTGACTCCGACTACAGCTCTCGCGGGAGCAGTAGCAACTACAGCAGCCTACATTCCCCGGGGAATCGCCCTCCCTCGCCGCCGGGTCCGGGTCTGCCAAAGGCGAACGCGACGAAGGGGGACGTGAACGGGCAGCAGCAGTGGAAGGTAATGATTGACGTGCTGAGGTTCAAGAACGTTAGAAGGTTCTCGAACATCCCCTTGTTAGCCGCTAGCTACGAGATCTCTAGGAAGAACCTAAGGAAGAAGGTGGCTCGCAAGAGAGACGGCGAAGACGATGACGATCTTCCCATTGATCTCGATAGCATCCCAACCAAGCCTTCTTGGCGAAATTTCCCTTACGCTGATCTCGCTGCTGCCACCGATAATTTCTCCCCTGAGAACATGCTTGGAAAAGGTGGTCATGCTGAAGTGTATAGAGGATGTTTACCGGACGGTCAAATTGTAGCAGTGAAGAGGCTGATGATGAATGATGAGAAGGAAATTGAGGACCAAGTTGGTGATTTCTTGTCAGAGCTTGGAATCATTGCTCACATAAACCACCCAAATGCAGCACTCCTTCTGGGATTTGGCATTGAGAAGGGCCTCTACTTTGTCCTCCAATACGCTCCTCGTGGCAGCCTCTCTTCTTTACTCTTTGGTTCTCAAGGCTTGGAGTGGAAGGCAAGGTTCAAGGTAGCTTTTGGGGTCGCTAAAGGATTGAAGTACCTCCATCATGATTGTCCAAGAAGAATCATTCACAGAGACATCAAAGCCTCAAACATATTACTCGACAATAACTTTGAAGCTGAGATTTCGGATTTCGGATTGGCAAAGTGGCTTCCAGACCAGTGGGAACATCATGTTGTGTTCCCCATTGAAGGCACATTCGGGTATTTGGCTCCAGAGTACTTTATGCATGGACTTGTGGATGAGAAGACTGATGTATTTGCATTCGGGGTTTTGTTATTGGAACTCATAACTGGGCGTCGCGCAGTCGATTCAAACAGCAGGGAGAGTCTTGTGATCTGGGCAAAACCACTGTTGGATGCAAAGCAGATTAAGGAAATAGTAGACCCAAGATTAGGAGATCAGTATGATCTTATTGAAATGAAGAATGCTATGACAACGGCTTCCCTATGTGTCCACCACAAGCCCTCCATGCGGCCATACATGAACAAGGTTGTGAAGCTGCTCAAGGGCGAAGAGGTAGCAGTTGAGATCACTCAAAAAACAAAATCCCCAAGATCATTATTGTTAGATGCATGTGATCTTGAAGACTATACTTGCTCTAATTACTTAAATGATCTTAATCGCCACAAGCAATTAATAATGGAGTGA 1494 0.4665 MQEFRGKLQKVIKKANPDIDWGVFNNYNNYYYNNRKEESKSGSDELASPRGMFEAMSTADSDYSSRGSSSNYSSLHSPGNRPPSPPGPGLPKANATKGDVNGQQQWKVMIDVLRFKNVRRFSNIPLLAASYEISRKNLRKKVARKRDGEDDDDLPIDLDSIPTKPSWRNFPYADLAAATDNFSPENMLGKGGHAEVYRGCLPDGQIVAVKRLMMNDEKEIEDQVGDFLSELGIIAHINHPNAALLLGFGIEKGLYFVLQYAPRGSLSSLLFGSQGLEWKARFKVAFGVAKGLKYLHHDCPRRIIHRDIKASNILLDNNFEAEISDFGLAKWLPDQWEHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELITGRRAVDSNSRESLVIWAKPLLDAKQIKEIVDPRLGDQYDLIEMKNAMTTASLCVHHKPSMRPYMNKVVKLLKGEEVAVEITQKTKSPRSLLLDACDLEDYTCSNYLNDLNRHKQLIME* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4589 497 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 32 497 - -
Amo13g4589 497 Gene3D Transferase(Phosphotransferase) domain 1 262 469 - -
Amo13g4589 497 ProSitePatterns Protein kinases ATP-binding region signature. 188 210 IPR017441 GO:0005524
Amo13g4589 497 ProSiteProfiles Protein kinase domain profile. 182 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4589 497 Gene3D Phosphorylase Kinase; domain 1 157 260 - -
Amo13g4589 497 Pfam Protein kinase domain 185 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4589 497 MobiDBLite consensus disorder prediction 58 78 - -
Amo13g4589 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Amo13g4589 497 PANTHER OS08G0249100 PROTEIN 32 497 - -
Amo13g4589 497 MobiDBLite consensus disorder prediction 34 101 - -
Amo13g4589 497 SMART serkin_6 182 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4589 497 SUPERFAMILY Protein kinase-like (PK-like) 162 450 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4589 Amo-Chr13 143107024 143109777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4589 144 473 Trihelix Transcription Factor Family AT5G38560 41.349 4.48e-72 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Amo13g4589 Pkinase 1.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4589 - - adu:107480901 921.383