Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4579 ATGGTAGGCAGCTACATACTGTGCCTGCTACTGCATCAACATTCAGATATCTTCACTGTCAAGCCTCAACCGATAATGCTATTACCGAGCAGAAACAGATCAGACTATGTGCATAATCAAAGTAGAAAAATCAAGAATGGAAGCTCCTCGTTGAAACAAATGTCCCAAGAAGGTTTAACAGAAGCCTATGGATGGGCTGCAAGAGATTCATCGGGAATTCTCTCCCCTTTACATTTCACCAGACGGGCAAATGGTGATACAGATATCACCATCAAGATACTCTACTGCGGGATTTGCCACTCCGATTTTCATATGCTGAAGAATGATCATGGCATAAGCATCTATCCCTTAGTCCCCGGGCATGAGATTGTGGGGGAAGTGACAAAGGTGGGAAGACGAGTTACAAAATTCAAGGTTGGTGACGTGGCTGGAGTGGGTGGCATTGTGGGCACGTGCGGCACGTGTTCCAACTGCACACAGGGCTTGGAAACTTACTGCCCCAAAATGATTCTAACCTCTAGCTCACACTACCATGATGGATCAATAACGTATGGAGGCTTCTCTGATAATTTTGTTGTTGATGAGCACTTTGCCGTCACAATTCCCGAATCTATGCCTCTGCATGCCACAGCCCCTTTGTTGTGTGCTGGAATCACTGTTTACAGCCCCATGTTGCACCACGGGCTCTGCAGGCCCGGTCAGCACTTGGGTGTGGTGGGCCTTGGTGGGCTCGGCCATCTGGCTGTTAAGTTTGCCAAGGCTTTTGGTATGAAGGTCACTGTTATAAGCACTTCGTCCCGAAAGAAGGAGGAAGCAATTGAACGTCTTGGTGTGGATTCCTTCTTGCTTAGTCATCAGCAACAACAATTGCAGGATGCGACCGGGACAATGGATGGGATCATTGACACAGTTTCAGCACCTCATTCTGTGTATCCTTTAGTTGGTTTATTGAAGACAGGAGGCAATTTGATATTGGTGGGTGCACCTGCAGCCTCATCTCCTGAATTACCGTCTCTGCCACTCATTATGGGGAGGAAGTCAATAAGTGGGAGTGCAGGTGGAGGAATGAGAGAGACACAAGAGATGATTGAATTTGCGGCAAAGCACAATATTAGTGCAGATGTGGAAGTTATTCCCATGGATTATGTGACCACTGCTATGGGTAGACTTGTCAACAATGATGTTCAATATCGATTCGTCATTGATGTAGCAAATACTTTGGACACTCCACGCACTAACTAA 1242 0.4654 MVGSYILCLLLHQHSDIFTVKPQPIMLLPSRNRSDYVHNQSRKIKNGSSSLKQMSQEGLTEAYGWAARDSSGILSPLHFTRRANGDTDITIKILYCGICHSDFHMLKNDHGISIYPLVPGHEIVGEVTKVGRRVTKFKVGDVAGVGGIVGTCGTCSNCTQGLETYCPKMILTSSSHYHDGSITYGGFSDNFVVDEHFAVTIPESMPLHATAPLLCAGITVYSPMLHHGLCRPGQHLGVVGLGGLGHLAVKFAKAFGMKVTVISTSSRKKEEAIERLGVDSFLLSHQQQQLQDATGTMDGIIDTVSAPHSVYPLVGLLKTGGNLILVGAPAASSPELPSLPLIMGRKSISGSAGGGMRETQEMIEFAAKHNISADVEVIPMDYVTTAMGRLVNNDVQYRFVIDVANTLDTPRTN* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4579 413 Pfam Zinc-binding dehydrogenase 243 367 IPR013149 -
Amo13g4579 413 PANTHER ALDEHYDE REDUCTASE 60 408 - -
Amo13g4579 413 SUPERFAMILY GroES-like 70 234 IPR011032 -
Amo13g4579 413 Gene3D - 216 373 - -
Amo13g4579 413 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 60 408 - -
Amo13g4579 413 SMART PKS_ER_names_mod 72 401 IPR020843 GO:0016491
Amo13g4579 413 CDD CAD1 64 402 - -
Amo13g4579 413 Gene3D - 65 403 - -
Amo13g4579 413 Pfam Alcohol dehydrogenase GroES-like domain 87 200 IPR013154 -
Amo13g4579 413 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 205 371 IPR036291 -
Amo13g4579 413 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 120 134 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4579 Amo-Chr13 142923315 142925386 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4579 61 407 Monolignol Biosynthesis Gene Families AT4G37990 63.401 5.33e-149 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4579 - K23232 aip:107621738 682.174